Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   FGL04_RS00635 Genome accession   NZ_LR594035
Coordinates   101744..102010 (+) Length   88 a.a.
NCBI ID   WP_138067846.1    Uniprot ID   A0A4U9XJK7
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 96744..107010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS00625 (NCTC5385_00127) rpoC 97673..101308 (+) 3636 WP_138067845.1 DNA-directed RNA polymerase subunit beta' -
  FGL04_RS00630 (NCTC5385_00128) - 101434..101805 (+) 372 WP_225247737.1 DUF1033 family protein -
  FGL04_RS00635 (NCTC5385_00129) comYC 101744..102010 (+) 267 WP_138067846.1 competence type IV pilus major pilin ComGC Machinery gene
  FGL04_RS00640 (NCTC5385_00130) comGD 101970..102398 (+) 429 WP_037598912.1 competence type IV pilus minor pilin ComGD -
  FGL04_RS00645 comGE 102451..102663 (+) 213 WP_229296016.1 competence system putative prepilin ComGE -
  FGL04_RS00650 (NCTC5385_00131) comGF 102683..103084 (+) 402 WP_171011213.1 competence type IV pilus minor pilin ComGF -
  FGL04_RS00655 (NCTC5385_00132) comGG 103062..103463 (+) 402 WP_138067849.1 competence type IV pilus minor pilin ComGG -
  FGL04_RS00660 (NCTC5385_00133) comYH 103508..104464 (+) 957 WP_138067850.1 class I SAM-dependent methyltransferase Machinery gene
  FGL04_RS00665 (NCTC5385_00134) - 104520..105713 (+) 1194 WP_138067851.1 acetate kinase -
  FGL04_RS00670 (NCTC5385_00135) - 106076..106285 (+) 210 WP_007895522.1 helix-turn-helix transcriptional regulator -
  FGL04_RS00675 (NCTC5385_00136) - 106282..106734 (+) 453 WP_138067852.1 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9861.53 Da        Isoelectric Point: 9.3497

>NTDB_id=1127275 FGL04_RS00635 WP_138067846.1 101744..102010(+) (comYC) [Streptococcus pseudoporcinus strain NCTC5385]
MLLVLLIISVLMLLFIPNLNKQKDMVTDKGKAAVVKIVDNQAELYELNQGASPKLSELESKGDISKEQAKAYRDYYAKHP
ESSPKVKN

Nucleotide


Download         Length: 267 bp        

>NTDB_id=1127275 FGL04_RS00635 WP_138067846.1 101744..102010(+) (comYC) [Streptococcus pseudoporcinus strain NCTC5385]
ATGCTACTGGTTTTATTAATCATCAGCGTACTTATGCTTCTCTTTATCCCCAACTTAAATAAACAAAAAGATATGGTTAC
GGATAAAGGCAAAGCCGCAGTTGTAAAAATTGTTGATAACCAAGCAGAACTCTATGAGCTAAATCAAGGAGCTAGTCCAA
AGTTGAGTGAGCTGGAAAGTAAAGGTGACATCAGTAAAGAACAGGCAAAAGCTTATCGAGACTATTATGCTAAACATCCT
GAATCAAGTCCTAAAGTTAAAAATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U9XJK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

58.427

100

0.591
  comGC/cglC Streptococcus pneumoniae Rx1

58.14

97.727

0.568
  comGC/cglC Streptococcus pneumoniae D39

58.14

97.727

0.568
  comGC/cglC Streptococcus pneumoniae R6

58.14

97.727

0.568
  comGC/cglC Streptococcus pneumoniae TIGR4

58.14

97.727

0.568
  comYC Streptococcus mutans UA140

59.722

81.818

0.489
  comYC Streptococcus mutans UA159

59.722

81.818

0.489
  comGC/cglC Streptococcus mitis SK321

56.944

81.818

0.466
  comYC Streptococcus suis isolate S10

54.167

81.818

0.443
  comGC/cglC Streptococcus mitis NCTC 12261

57.353

77.273

0.443
  comGC Lactococcus lactis subsp. cremoris KW2

54.688

72.727

0.398

Multiple sequence alignment