Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   E0F40_RS09525 Genome accession   NZ_LR216065
Coordinates   1772237..1773493 (-) Length   418 a.a.
NCBI ID   WP_000642683.1    Uniprot ID   A0A4J2B9E1
Organism   Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1767237..1778493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F40_RS09495 (SAMEA3714487_01800) - 1767307..1767513 (-) 207 WP_000366093.1 hypothetical protein -
  E0F40_RS09500 (SAMEA3714487_01801) - 1767500..1767661 (-) 162 WP_001055999.1 helix-turn-helix domain-containing protein -
  E0F40_RS09505 (SAMEA3714487_01802) lytA 1768007..1768963 (-) 957 WP_000405234.1 N-acetylmuramoyl-L-alanine amidase LytA -
  E0F40_RS09510 (SAMEA3714487_01803) - 1769339..1770709 (-) 1371 WP_001036280.1 MATE family efflux transporter -
  E0F40_RS09520 (SAMEA3714487_01804) recA 1771016..1772182 (-) 1167 WP_001085463.1 recombinase RecA Machinery gene
  E0F40_RS09525 (SAMEA3714487_01805) cinA 1772237..1773493 (-) 1257 WP_000642683.1 competence/damage-inducible protein A Machinery gene
  E0F40_RS09530 (SAMEA3714487_01806) brpA 1773580..1774596 (-) 1017 WP_000239278.1 biofilm formation/cell division transcriptional regulator BrpA -
  E0F40_RS09535 (SAMEA3714487_01807) - 1774604..1775122 (-) 519 WP_000455537.1 GNAT family N-acetyltransferase -
  E0F40_RS09540 (SAMEA3714487_01808) tsaE 1775112..1775555 (-) 444 WP_000288232.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  E0F40_RS09545 (SAMEA3714487_01809) comM 1775641..1776261 (-) 621 WP_000839908.1 hypothetical protein Regulator
  E0F40_RS09555 (SAMEA3714487_01810) - 1776644..1777507 (-) 864 WP_001093619.1 helix-turn-helix domain-containing protein -
  E0F40_RS11795 (SAMEA3714487_01811) - 1777696..1777866 (+) 171 WP_000742180.1 PhrA family quorum-sensing system peptide -

Sequence


Protein


Download         Length: 418 a.a.        Molecular weight: 45156.46 Da        Isoelectric Point: 4.7169

>NTDB_id=1126362 E0F40_RS09525 WP_000642683.1 1772237..1773493(-) (cinA) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEARLLSLLEIASQRSSLVILTGGLGPTEDDLTKQT
LAKFLGKELVFDPQAQEKLDVFFAQRPDYARTPNNERQAQIVEGATPLPNETGLAVGGILEVDGVTYVVLPGPPSELKPM
VLNQLLPKLMTGSKLYSRVLRFFGIGESQLVTILADLIDNQTDPTLAPYAKTGEVTLRLSTKASSQEEANQALDILENQI
LNRQTFEGLSLRELCYGYGEETSLASIVVEKLKRQGKTITAAESLTAGLFQARVADFSGASSIFKGGFVTYSLEEKSRML
DIPAKNLEEHGVVSEFTAQKMAEQARSKTQSDFGISLTGVAGPDSLEGHPVGTVFIGLAQEQGTEVIKVNIGGRSRADVR
HIAVMHAFNLVRKALLSD

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1126362 E0F40_RS09525 WP_000642683.1 1772237..1773493(-) (cinA) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
ATGAAAGCAGAAATTATTGCTGTTGGAACAGAGATTTTGACAGGACAGATTGTCAACACCAATGCTCAGTTTTTATCAGA
AAAACTAGCAGAGATTGGGGTAGACGTATATTTTCAGACGGCTGTAGGAGACAATGAAGCTCGTCTCTTGTCTTTGCTTG
AGATTGCCAGTCAACGTAGTAGTCTGGTGATTTTGACAGGCGGTTTGGGCCCAACTGAGGACGATTTGACAAAACAAACT
CTGGCTAAATTTTTAGGGAAGGAATTAGTCTTCGATCCTCAGGCACAAGAAAAGTTAGATGTATTTTTCGCCCAGAGACC
AGACTATGCCCGAACACCGAATAATGAAAGACAAGCTCAAATTGTAGAAGGTGCGACTCCACTGCCAAACGAAACAGGAC
TGGCTGTAGGAGGAATATTGGAAGTCGATGGAGTGACCTACGTTGTCCTTCCAGGTCCACCAAGTGAATTGAAACCCATG
GTCTTAAACCAACTTCTACCCAAGTTGATGACAGGGAGCAAGCTGTATTCCCGAGTTCTTCGTTTCTTTGGGATTGGCGA
AAGTCAGTTGGTTACGATTTTAGCTGATTTAATTGATAATCAAACAGATCCGACCTTGGCCCCTTATGCTAAGACAGGAG
AAGTCACTCTGCGTCTGTCAACAAAAGCTAGCAGTCAAGAAGAGGCGAATCAAGCGCTGGATATCTTAGAAAACCAAATC
TTGAATCGCCAAACTTTTGAAGGCCTTTCTTTACGAGAACTTTGTTATGGTTATGGGGAAGAGACTAGTTTAGCCAGTAT
TGTGGTAGAAAAGCTGAAAAGGCAAGGGAAAACTATCACGGCTGCAGAGAGTTTGACGGCTGGTCTTTTCCAAGCTAGGG
TAGCGGATTTTTCGGGTGCTTCAAGTATATTTAAGGGTGGTTTTGTAACCTATAGCCTGGAGGAAAAATCAAGGATGTTG
GATATTCCTGCCAAGAATTTGGAAGAACATGGTGTGGTGTCTGAATTTACAGCTCAGAAGATGGCTGAGCAGGCACGAAG
CAAGACCCAGTCTGATTTTGGAATTAGTTTGACTGGAGTGGCAGGACCAGATAGCCTAGAAGGACACCCAGTTGGGACAG
TCTTCATAGGCTTGGCGCAAGAGCAGGGAACTGAGGTTATCAAGGTTAATATTGGAGGCAGAAGCCGAGCAGATGTACGT
CACATTGCGGTTATGCATGCCTTTAACCTAGTTCGCAAGGCTTTATTAAGTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A4J2B9E1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

96.411

100

0.964

  cinA Streptococcus mitis NCTC 12261

96.172

100

0.962

  cinA Streptococcus pneumoniae TIGR4

95.455

100

0.955

  cinA Streptococcus pneumoniae Rx1

95.215

100

0.952

  cinA Streptococcus pneumoniae R6

95.215

100

0.952

  cinA Streptococcus pneumoniae D39

94.976

100

0.95

  cinA Streptococcus mutans UA159

72.488

100

0.725

  cinA Streptococcus suis isolate S10

54.808

99.522

0.545

  cinA Bacillus subtilis subsp. subtilis str. 168

46.411

100

0.464


Multiple sequence alignment