Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PMYSY11_RS18415 Genome accession   NZ_LR215729
Coordinates   3997098..3998315 (+) Length   405 a.a.
NCBI ID   WP_150547672.1    Uniprot ID   A0A653DZT9
Organism   Pseudomonas marincola strain YSy11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3992098..4003315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMYSY11_RS18395 (PMYSY11_3793) nadC 3992982..3993830 (+) 849 WP_150547668.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PMYSY11_RS18400 (PMYSY11_3794) - 3993918..3994370 (-) 453 WP_150547669.1 pilin -
  PMYSY11_RS18405 (PMYSY11_3795) - 3994728..3995171 (-) 444 WP_150547670.1 pilin -
  PMYSY11_RS18410 (PMYSY11_3796) pilB 3995392..3997095 (+) 1704 WP_150547671.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PMYSY11_RS18415 (PMYSY11_3797) pilC 3997098..3998315 (+) 1218 WP_150547672.1 type II secretion system F family protein Machinery gene
  PMYSY11_RS18420 (PMYSY11_3798) pilD 3998319..3999194 (+) 876 WP_150547673.1 prepilin peptidase Machinery gene
  PMYSY11_RS18425 (PMYSY11_3799) coaE 3999476..4000084 (+) 609 WP_069898092.1 dephospho-CoA kinase -
  PMYSY11_RS18430 (PMYSY11_3800) yacG 4000081..4000287 (+) 207 WP_069898093.1 DNA gyrase inhibitor YacG -
  PMYSY11_RS18435 (PMYSY11_3802) - 4001151..4001828 (-) 678 WP_150547674.1 energy-coupling factor ABC transporter permease -
  PMYSY11_RS18440 (PMYSY11_3803) - 4001951..4002580 (+) 630 WP_069898095.1 DUF1780 domain-containing protein -
  PMYSY11_RS18445 (PMYSY11_3804) - 4002647..4003141 (+) 495 WP_150547675.1 MOSC domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44203.96 Da        Isoelectric Point: 9.8075

>NTDB_id=1125933 PMYSY11_RS18415 WP_150547672.1 3997098..3998315(+) (pilC) [Pseudomonas marincola strain YSy11]
MAEKALKTSVFTWEGKDKKGSRVKGELKGTNPALVKAQLRKQGINPTKVRKKSVSIFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGLDNPNMRKLVDEVKQDVAAGNSFAASLRKRPDYFDDLYCNLVDSGEQSGALETLLDRVATYKEKT
EALKAKIKKAMNYPIAVIVVALIVSAILLIKVVPQFQSVFSSFGADLPTFTLMVVALSEVVQKWWLAMLAGLFAIIFAIK
NLHKHSEKFRDWIDRTALKMPIVGDIIYKSAIARFARTLATTFAAGVPLVDALDSVAGATGNIVFKNATNKIKADVSSGM
QLNFSMRSTDVFPSMAIQMTAIGEESGSLDEMLDKVASYYEEEVDNAVDGLTSLMEPLIMSVLGVLIGGLVIAMYLPIFQ
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1125933 PMYSY11_RS18415 WP_150547672.1 3997098..3998315(+) (pilC) [Pseudomonas marincola strain YSy11]
ATGGCGGAAAAAGCGCTTAAAACCAGTGTATTCACCTGGGAAGGTAAAGATAAAAAAGGCAGCAGGGTCAAGGGCGAGCT
CAAAGGCACCAACCCGGCGCTGGTCAAAGCGCAACTGCGCAAGCAAGGCATCAATCCGACCAAGGTACGCAAGAAGTCGG
TTTCGATTTTTAGCGCTGGCAAAAAAATTAAACCCATGGATATCGCTCTGTTCACCCGGCAGATGGCGACCATGATGAAA
GCCGGTGTGCCACTGCTTCAATCATTCGATATCATCGGCGAGGGTTTGGATAACCCTAATATGCGCAAGCTAGTCGACGA
AGTGAAACAGGACGTAGCGGCAGGTAATAGCTTTGCAGCATCTCTGCGTAAAAGACCCGACTATTTTGATGACTTGTACT
GCAACCTTGTAGACTCTGGCGAACAGTCGGGGGCCTTGGAAACACTGCTAGACCGTGTGGCTACCTACAAGGAAAAAACT
GAAGCTCTAAAAGCCAAAATCAAAAAGGCCATGAACTACCCGATTGCGGTTATTGTTGTGGCACTTATTGTTTCGGCGAT
TTTGCTAATTAAAGTTGTACCCCAGTTCCAATCGGTGTTCTCGAGTTTTGGCGCCGACCTTCCCACGTTTACGTTGATGG
TGGTTGCCCTATCCGAAGTAGTGCAAAAATGGTGGCTCGCCATGTTGGCAGGCCTTTTTGCAATCATTTTTGCCATCAAA
AACCTGCACAAACACTCAGAGAAATTTCGCGACTGGATTGATCGCACAGCGCTTAAAATGCCGATCGTTGGCGATATCAT
CTATAAATCCGCCATAGCACGTTTTGCCCGCACGCTGGCAACTACATTCGCAGCAGGTGTACCACTGGTTGATGCCCTGG
ACTCCGTAGCTGGCGCAACAGGCAACATCGTATTCAAGAACGCCACCAACAAGATCAAAGCGGACGTTTCATCAGGCATG
CAGCTCAACTTTTCCATGCGCTCAACGGATGTATTTCCGAGCATGGCAATTCAAATGACCGCTATCGGCGAAGAGTCTGG
CTCGCTTGATGAAATGCTCGACAAGGTAGCTAGCTACTACGAAGAAGAAGTAGATAATGCCGTTGATGGCCTGACCTCAC
TGATGGAGCCGCTGATCATGTCGGTTCTGGGCGTTCTGATTGGCGGCCTTGTTATCGCCATGTACCTGCCGATCTTCCAA
CTGGGTCAAGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653DZT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

79.753

100

0.798
  pilC Acinetobacter baylyi ADP1

61.084

100

0.612
  pilC Acinetobacter baumannii D1279779

60.988

100

0.61
  pilC Legionella pneumophila strain ERS1305867

53.788

97.778

0.526
  pilG Neisseria gonorrhoeae MS11

44.913

99.506

0.447
  pilG Neisseria meningitidis 44/76-A

44.913

99.506

0.447
  pilC Vibrio cholerae strain A1552

42.469

100

0.425
  pilC Vibrio campbellii strain DS40M4

40.909

97.778

0.4
  pilC Thermus thermophilus HB27

37.093

98.519

0.365

Multiple sequence alignment