Detailed information NTG1125934

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PMYSY11_RS18420
• Genome accession: NZ_LR215729
• Coordinates: 3998319..3999194 (+)
• Length: 291 a.a.
• NCBI ID: WP_150547673.1
• Uniprot ID: -
• Organism: Pseudomonas marincola strain YSy11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3993319..4004194

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PMYSY11_RS18400 (PMYSY11_3794)	-	3993918..3994370 (-)	453	WP_150547669.1	pilin	-
PMYSY11_RS18405 (PMYSY11_3795)	-	3994728..3995171 (-)	444	WP_150547670.1	pilin	-
PMYSY11_RS18410 (PMYSY11_3796)	pilB	3995392..3997095 (+)	1704	WP_150547671.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PMYSY11_RS18415 (PMYSY11_3797)	pilC	3997098..3998315 (+)	1218	WP_150547672.1	type II secretion system F family protein	Machinery gene
PMYSY11_RS18420 (PMYSY11_3798)	pilD	3998319..3999194 (+)	876	WP_150547673.1	prepilin peptidase	Machinery gene
PMYSY11_RS18425 (PMYSY11_3799)	coaE	3999476..4000084 (+)	609	WP_069898092.1	dephospho-CoA kinase	-
PMYSY11_RS18430 (PMYSY11_3800)	yacG	4000081..4000287 (+)	207	WP_069898093.1	DNA gyrase inhibitor YacG	-
PMYSY11_RS18435 (PMYSY11_3802)	-	4001151..4001828 (-)	678	WP_150547674.1	energy-coupling factor ABC transporter permease	-
PMYSY11_RS18440 (PMYSY11_3803)	-	4001951..4002580 (+)	630	WP_069898095.1	DUF1780 domain-containing protein	-
PMYSY11_RS18445 (PMYSY11_3804)	-	4002647..4003141 (+)	495	WP_150547675.1	MOSC domain-containing protein	-
PMYSY11_RS18450 (PMYSY11_3805)	-	4003221..4003394 (+)	174	WP_069898097.1	DUF3094 family protein	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32086.19 Da
• Isoelectric Point: 6.8272

>NTDB_id=1125934 PMYSY11_RS18420 WP_150547673.1 3998319..3999194(+) (pilD) [Pseudomonas marincola strain YSy11]
MPIIDFMASNLLAFSLCILLLGLLVGSFINVVVYRLPIMMQRDWQMQAREALELPEQPKGKTFNLILPNSTCTSCAHEIR
PWENIPIVSYLFLRGKCSSCKAPISKRYPLAELACGLLSAFIAWHFGFGWQAAAMLVLSWGLLAMSLIDVDHQLLPDALV
LPLLWLGLIVNSFGLFTNLDSALWGAVAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGLIMLRLQNSETSTPIPFGPYLAIAGWIALIWGDQITSTYLHFAGFGA

Nucleotide

• Length: 876 bp

>NTDB_id=1125934 PMYSY11_RS18420 WP_150547673.1 3998319..3999194(+) (pilD) [Pseudomonas marincola strain YSy11]
ATGCCAATAATCGATTTTATGGCCAGCAATTTGCTGGCCTTTTCTTTGTGTATTTTGCTGCTTGGCTTGTTGGTTGGCAG
CTTCATTAACGTGGTGGTTTACCGGCTGCCGATCATGATGCAGCGCGACTGGCAGATGCAGGCACGCGAGGCGCTGGAAC
TACCCGAGCAGCCGAAAGGCAAAACCTTCAACCTGATTCTTCCGAACTCGACCTGCACCTCTTGCGCGCACGAAATTCGC
CCCTGGGAAAATATTCCCATCGTGAGTTATCTGTTTCTTCGCGGCAAATGCTCAAGCTGCAAAGCCCCCATCAGCAAGCG
CTATCCGCTGGCGGAGCTAGCTTGCGGCCTGCTTTCAGCATTCATTGCCTGGCATTTTGGTTTTGGCTGGCAAGCAGCCG
CCATGCTCGTATTGAGCTGGGGCTTGCTGGCAATGAGCCTGATTGATGTAGACCACCAGCTACTGCCGGATGCACTGGTA
TTGCCGCTGCTGTGGCTCGGTTTGATTGTGAATAGCTTCGGCTTGTTCACCAACCTGGACTCTGCACTATGGGGTGCGGT
CGCGGGGTATTTGAGCCTCTGGTCGGTGTATTGGCTGTTCAAGCTGATCACGGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGTTGCTGGCCATGCTCGGTGCGTGGGGTGGCTGGCAGATATTGCCGCTGACAATATTGCTCTCGTCATTGGTAGGC
GCGGTGCTGGGTTTGATCATGCTGCGCCTGCAAAACAGCGAAACCAGCACACCAATTCCGTTCGGCCCCTATTTGGCAAT
CGCCGGCTGGATCGCGCTGATCTGGGGCGATCAAATCACCTCGACCTACCTGCACTTCGCCGGCTTCGGCGCATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.522	94.845	0.536
pilD	Acinetobacter baumannii D1279779	51.761	97.595	0.505
pilD	Acinetobacter nosocomialis M2	51.761	97.595	0.505
pilD	Vibrio campbellii strain DS40M4	53.933	91.753	0.495
pilD	Neisseria gonorrhoeae MS11	50.575	89.691	0.454