Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   S7S_RS04905 Genome accession   NZ_CP004387
Coordinates   1040668..1041897 (-) Length   409 a.a.
NCBI ID   WP_008739564.1    Uniprot ID   A0A0B4XL33
Organism   Isoalcanivorax pacificus W11-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1035668..1046897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S7S_RS04880 (S7S_04865) argJ 1036693..1037892 (+) 1200 WP_008739559.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  S7S_RS04885 (S7S_04870) - 1037923..1038834 (+) 912 WP_008739560.1 Nudix family hydrolase -
  S7S_RS04890 (S7S_04875) yacG 1038883..1039065 (-) 183 WP_008739561.1 DNA gyrase inhibitor YacG -
  S7S_RS04895 (S7S_04880) coaE 1039070..1039684 (-) 615 WP_008739562.1 dephospho-CoA kinase -
  S7S_RS04900 (S7S_04885) pilD 1039783..1040655 (-) 873 WP_008739563.1 prepilin peptidase Machinery gene
  S7S_RS04905 (S7S_04890) pilC 1040668..1041897 (-) 1230 WP_008739564.1 type II secretion system F family protein Machinery gene
  S7S_RS04910 (S7S_04895) pilB 1041900..1043606 (-) 1707 WP_035205748.1 type IV-A pilus assembly ATPase PilB Machinery gene
  S7S_RS20170 - 1044093..1044210 (+) 118 Protein_985 pilin -
  S7S_RS04915 (S7S_04900) - 1044222..1044560 (+) 339 WP_420795643.1 pilin -
  S7S_RS04920 (S7S_04905) - 1044786..1045946 (+) 1161 WP_169745548.1 serine hydrolase domain-containing protein -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44400.14 Da        Isoelectric Point: 9.9147

>NTDB_id=112322 S7S_RS04905 WP_008739564.1 1040668..1041897(-) (pilC) [Isoalcanivorax pacificus W11-5]
MAKAAAVKQVKKATFQYEGTDRKGSRIKGEILTTNPALARAELRKQGINVKRVRKKSELSFGGKKSIKPSDIAIFTRQLA
TMMKAGVPLVQSFDIVAEGLDNATMKEVVLKIKTDIEGGTNFANALRNHPKYFDDLYCSLVEAGEQSGALETMLDRVALY
KEKSEALKAKIKKAMKYPATVMVVAGVVTGILLIKVVPTFQTLFEGFGAELPAMTQFVINLSESMQKNGLMIVVGIAAFI
FAITTLKRRSKAFSDALDRLYLKLPVVGDIIYKATVARYARTLSTTFSAGVPLIDALEACAGATGNAVYRNAVYRIRDDV
STGQQLQFAMRSTGVFPSMALQMTAIGEESGALDAMLAKVAQHFEDEVDNAVDGLTSMMEPLIMSFLGIVVGGLIVAMYL
PIFQLGNMM

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=112322 S7S_RS04905 WP_008739564.1 1040668..1041897(-) (pilC) [Isoalcanivorax pacificus W11-5]
ATGGCGAAAGCAGCAGCAGTCAAGCAGGTCAAGAAAGCCACCTTCCAGTATGAAGGGACGGACCGCAAGGGCTCCCGCAT
CAAGGGCGAGATACTGACCACCAATCCTGCACTGGCGCGCGCCGAACTGCGCAAGCAGGGGATCAATGTCAAACGGGTGC
GTAAGAAGTCGGAGCTCAGCTTCGGCGGCAAGAAGAGCATCAAGCCCTCGGACATCGCGATCTTCACCCGCCAGCTCGCC
ACCATGATGAAGGCCGGCGTGCCGCTGGTGCAGTCGTTCGATATTGTTGCCGAAGGTCTGGACAACGCGACCATGAAAGA
GGTGGTGCTGAAGATCAAGACCGATATTGAAGGCGGCACCAATTTTGCGAATGCCTTGCGCAACCATCCGAAGTATTTTG
ACGATCTCTACTGCAGTCTGGTGGAAGCCGGTGAACAGTCCGGTGCGCTGGAAACCATGCTGGACCGCGTGGCGCTCTAC
AAGGAAAAGAGCGAGGCACTGAAAGCCAAGATCAAGAAGGCCATGAAATACCCCGCTACCGTAATGGTCGTGGCCGGCGT
GGTTACAGGTATCCTGCTGATCAAGGTGGTACCCACCTTCCAGACCCTGTTCGAAGGCTTCGGCGCCGAGTTGCCGGCCA
TGACCCAGTTCGTGATCAACCTGTCGGAGAGCATGCAGAAGAATGGCCTGATGATCGTGGTGGGCATCGCCGCCTTCATT
TTTGCCATCACAACATTGAAGCGTCGCTCCAAGGCGTTCTCTGATGCACTCGACCGGCTGTACCTGAAGCTGCCGGTCGT
GGGCGACATCATCTACAAGGCCACCGTCGCCCGTTACGCCCGCACGCTCTCCACCACCTTCTCGGCCGGCGTGCCGTTGA
TCGACGCCCTGGAAGCCTGCGCCGGCGCCACCGGCAATGCCGTCTACCGTAACGCCGTCTACCGCATCCGCGATGATGTC
TCCACCGGCCAGCAACTGCAGTTCGCCATGCGTTCTACCGGCGTATTCCCCAGCATGGCGTTGCAGATGACCGCCATCGG
CGAAGAATCCGGCGCACTGGATGCCATGCTGGCCAAAGTTGCCCAGCACTTCGAGGATGAGGTGGACAATGCGGTGGACG
GTTTGACCAGCATGATGGAACCGCTGATCATGAGCTTCCTCGGCATCGTCGTGGGCGGCCTGATCGTCGCCATGTACCTG
CCTATCTTCCAGCTCGGCAACATGATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B4XL33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

65.764

99.267

0.653
  pilC Acinetobacter baylyi ADP1

64.128

99.511

0.638
  pilC Pseudomonas stutzeri DSM 10701

62.129

98.778

0.614
  pilC Legionella pneumophila strain ERS1305867

54.177

96.577

0.523
  pilG Neisseria meningitidis 44/76-A

44.417

98.533

0.438
  pilG Neisseria gonorrhoeae MS11

44.417

98.533

0.438
  pilC Vibrio cholerae strain A1552

43.367

95.844

0.416
  pilC Vibrio campbellii strain DS40M4

42.748

96.088

0.411
  pilC Thermus thermophilus HB27

37.965

98.533

0.374

Multiple sequence alignment