Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   EL203_RS04715 Genome accession   NZ_LR134383
Coordinates   1018601..1020037 (+) Length   478 a.a.
NCBI ID   WP_058470274.1    Uniprot ID   -
Organism   Legionella jordanis strain NCTC11533     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1013601..1025037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL203_RS04690 (NCTC11533_00964) - 1014677..1015711 (-) 1035 WP_058470279.1 hypothetical protein -
  EL203_RS04695 (NCTC11533_00965) pilM 1015969..1017006 (+) 1038 WP_058470278.1 type IV pilus biogenesis protein PilM -
  EL203_RS04700 (NCTC11533_00966) - 1016999..1017550 (+) 552 WP_058470277.1 PilN domain-containing protein -
  EL203_RS04705 (NCTC11533_00967) - 1017561..1018127 (+) 567 WP_058470276.1 type 4a pilus biogenesis protein PilO -
  EL203_RS04710 (NCTC11533_00968) - 1018128..1018604 (+) 477 WP_058470275.1 pilus assembly protein PilP -
  EL203_RS04715 (NCTC11533_00969) pilQ 1018601..1020037 (+) 1437 WP_058470274.1 type IV pilus secretin PilQ Machinery gene
  EL203_RS04720 (NCTC11533_00970) aroK 1020337..1020864 (+) 528 WP_058470273.1 shikimate kinase AroK -
  EL203_RS04725 (NCTC11533_00971) aroB 1020851..1021960 (+) 1110 WP_058470272.1 3-dehydroquinate synthase -
  EL203_RS04730 (NCTC11533_00972) - 1021964..1023499 (+) 1536 WP_058470271.1 AAA family ATPase -
  EL203_RS04735 pnuC 1023483..1024127 (-) 645 WP_058470270.1 nicotinamide riboside transporter PnuC -
  EL203_RS04740 (NCTC11533_00974) - 1024434..1024862 (+) 429 WP_058470269.1 universal stress protein -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 52651.01 Da        Isoelectric Point: 9.6781

>NTDB_id=1122555 EL203_RS04715 WP_058470274.1 1018601..1020037(+) (pilQ) [Legionella jordanis strain NCTC11533]
MIRLQCFYVILGLYLLITNEFAFANPAAAAPPSDTKALEQSFHQKRISLNFQDIEVRAVLQVLAEFAGINMVVSDTVKGK
ITLSLNNVAWDHALSIILRTQSLEKRLMGRVLFIAPTDEISHYEKKVQESKLELKNLAPLKSQLITINYAKVSDIASILQ
DKKEAFLSPRGQLIADPRTNTLWVQDSASRLATIRKIIKQFDVPVKQVLIEARIVNVTKDVAQDLGLHFSISKPGLLSSL
RAQGQNLEASSSLAERLNFDFGNLAVPSSPVSIGVALAKLGDGILLDLELSALESEGRGEVISSPRLITTNQQPALIESG
EEIPYQESTSSGATAVSFKKAVLSLKVTPQITPDAKILMDLKINQDIPTPKVFNGVPTILTKEIQTKILANNCQTIVLGG
IYKQDKNNEINRVPFLGELPLLGGLFRNRAASIRNEELLIFITPRIITNYSLPKHPNNGRQNVVRGVKLVNQEDITRS

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=1122555 EL203_RS04715 WP_058470274.1 1018601..1020037(+) (pilQ) [Legionella jordanis strain NCTC11533]
TTGATTAGACTGCAATGTTTTTACGTCATACTAGGACTGTATCTACTGATAACCAATGAATTCGCTTTTGCTAATCCGGC
AGCAGCGGCTCCGCCTTCGGACACCAAAGCCTTAGAGCAATCGTTTCATCAAAAACGAATTTCTTTAAATTTTCAAGACA
TTGAAGTTCGCGCTGTTTTGCAGGTATTGGCTGAATTTGCTGGAATAAATATGGTTGTCAGTGATACAGTAAAGGGCAAA
ATTACACTTAGTTTAAACAATGTAGCTTGGGATCATGCTTTGAGTATTATTTTACGAACGCAATCTCTGGAGAAGAGATT
GATGGGTAGAGTTTTGTTTATTGCTCCTACAGATGAAATCAGCCATTATGAAAAAAAAGTTCAGGAATCCAAACTCGAAC
TGAAAAACTTGGCTCCTTTGAAGTCCCAGCTCATTACCATAAACTACGCCAAAGTTTCTGACATTGCCAGTATCTTACAG
GATAAAAAGGAGGCTTTCCTTTCTCCGCGAGGTCAGCTTATTGCTGATCCCAGAACAAATACATTGTGGGTTCAGGACAG
CGCGAGTCGCTTGGCAACCATTAGAAAAATAATTAAGCAGTTCGATGTGCCGGTGAAACAAGTGTTAATTGAGGCGCGTA
TTGTCAATGTGACCAAGGACGTTGCGCAGGATTTGGGTTTGCATTTTAGTATTTCCAAACCTGGATTATTGTCTTCCTTA
AGAGCTCAAGGACAAAATCTTGAAGCAAGTTCCTCTCTGGCTGAGCGTTTAAATTTTGATTTTGGCAATCTGGCTGTCCC
CAGTTCACCTGTCTCTATTGGGGTTGCGCTGGCCAAATTAGGCGACGGTATTTTGCTTGATTTAGAGCTTTCCGCACTTG
AAAGCGAAGGGCGCGGAGAGGTAATCTCAAGCCCACGGCTGATTACCACCAACCAGCAGCCTGCATTAATTGAGTCTGGA
GAGGAAATTCCTTACCAGGAATCCACTTCCAGTGGCGCCACTGCTGTGTCATTCAAAAAAGCCGTACTCAGTTTGAAAGT
TACGCCACAAATTACACCTGACGCTAAAATTTTAATGGATTTGAAAATTAACCAGGACATCCCTACACCAAAAGTGTTTA
ATGGAGTGCCGACAATTTTAACAAAGGAAATTCAAACCAAGATCTTAGCAAATAATTGTCAGACCATTGTGCTGGGTGGA
ATCTATAAACAAGATAAAAATAACGAGATAAATCGCGTACCTTTTTTGGGGGAGCTGCCTTTGCTGGGCGGATTATTTCG
AAATCGGGCTGCATCAATTCGAAATGAGGAGTTGCTCATTTTCATTACTCCTAGGATAATAACAAACTATTCTTTGCCAA
AACATCCGAATAACGGAAGGCAAAATGTTGTAAGAGGTGTAAAATTAGTGAATCAGGAAGATATAACAAGATCTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(292-447)

Bacterial type II/III secretion system short domain (Secretin_N)

(143-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Legionella pneumophila strain ERS1305867

60.277

90.586

0.546
  pilQ Legionella pneumophila strain Lp02

60.046

90.586

0.544
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

44.858

95.607

0.429
  pilQ Vibrio cholerae strain A1552

44.858

95.607

0.429
  pilQ Vibrio campbellii strain DS40M4

43.011

97.28

0.418
  comQ Acinetobacter baylyi ADP1

41.978

95.188

0.4
  pilQ Pseudomonas aeruginosa PAK

41.972

91.213

0.383
  pilQ Acinetobacter baumannii D1279779

38.889

97.908

0.381
  pilQ Acinetobacter baumannii strain A118

38.889

97.908

0.381

Multiple sequence alignment