Detailed information NTG1121508

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: EL133_RS01060
• Genome accession: NZ_LR134323
• Coordinates: 208965..209450 (+)
• Length: 161 a.a.
• NCBI ID: WP_006738971.1
• Uniprot ID: G5KHN3
• Organism: Streptococcus urinalis strain NCTC13766
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 203965..214450

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL133_RS01040 (NCTC13766_00207)	-	205225..205761 (+)	537	WP_006740490.1	DUF536 domain-containing protein	-
EL133_RS01045 (NCTC13766_00208)	-	205906..206547 (+)	642	WP_006739786.1	MerR family transcriptional regulator	-
EL133_RS01050 (NCTC13766_00209)	mutY	206750..207907 (-)	1158	WP_006739425.1	A/G-specific adenine glycosylase	-
EL133_RS01055 (NCTC13766_00210)	rpsF	208663..208953 (+)	291	WP_006738668.1	30S ribosomal protein S6	-
EL133_RS01060 (NCTC13766_00211)	ssb	208965..209450 (+)	486	WP_006738971.1	single-stranded DNA-binding protein	Machinery gene
EL133_RS01065 (NCTC13766_00212)	rpsR	209563..209802 (+)	240	WP_002983142.1	30S ribosomal protein S18	-
EL133_RS01070 (NCTC13766_00213)	-	209928..210455 (+)	528	WP_006740188.1	YqeG family HAD IIIA-type phosphatase	-
EL133_RS01075 (NCTC13766_00214)	yqeH	210455..211567 (+)	1113	WP_006739679.1	ribosome biogenesis GTPase YqeH	-
EL133_RS01080 (NCTC13766_00215)	yhbY	211583..211894 (+)	312	WP_006738747.1	ribosome assembly RNA-binding protein YhbY	-
EL133_RS01085 (NCTC13766_00216)	-	211925..212557 (+)	633	WP_006740146.1	nicotinate-nucleotide adenylyltransferase	-
EL133_RS01090 (NCTC13766_00217)	yqeK	212554..213144 (+)	591	WP_006739954.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	-
EL133_RS01095 (NCTC13766_00218)	-	213146..213670 (+)	525	WP_006739543.1	cysteine hydrolase family protein	-
EL133_RS01100 (NCTC13766_00219)	rsfS	213683..214036 (+)	354	WP_006739511.1	ribosome silencing factor	-

Sequence

Protein

• Length: 161 a.a.
• Molecular weight: 17968.63 Da
• Isoelectric Point: 4.9008

>NTDB_id=1121508 EL133_RS01060 WP_006738971.1 208965..209450(+) (ssb) [Streptococcus urinalis strain NCTC13766]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQSAENLANWAKKGSLVGITGRIQTR
NYENQQGQRVYVTEVIADNFQMLESRATREGNSNSSYNSGGYNSSSSNYSSSQQQTPNFGRDESPFGNSNPMDISDDDLP
F

Nucleotide

• Length: 486 bp

>NTDB_id=1121508 EL133_RS01060 WP_006738971.1 208965..209450(+) (ssb) [Streptococcus urinalis strain NCTC13766]
ATGATAAATAATGTAGTACTAGTTGGTCGTATGACCAAAGATGCAGAACTCCGTTACACACCAAGTCAAGTAGCTGTTGC
TACTTTTACACTTGCTGTTAACAGAACTTTTAAAAGCCAAAATGGTGAACGTGAGGCAGATTTTATTAACTGTGTCATTT
GGCGCCAATCAGCTGAAAATTTAGCAAATTGGGCTAAAAAAGGATCACTTGTCGGTATCACAGGGCGTATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGTGTATACGTAACAGAAGTTATTGCAGACAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTAACTCAAATAGTTCTTATAATTCTGGTGGCTATAATAGCTCATCGAGTAACTATTCATCTTCACAAC
AACAAACACCAAATTTTGGTAGAGATGAAAGTCCATTTGGAAACTCAAATCCAATGGATATCTCAGATGATGATCTTCCA
TTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: G5KHN3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	61.176	100	0.646
ssbA	Bacillus subtilis subsp. subtilis str. 168	58.14	100	0.621
ssbB	Bacillus subtilis subsp. subtilis str. 168	58.491	65.839	0.385
ssbB	Streptococcus sobrinus strain NIDR 6715-7	53.509	70.807	0.379
ssbB/cilA	Streptococcus pneumoniae TIGR4	50.862	72.05	0.366
ssbB/cilA	Streptococcus mitis NCTC 12261	50	72.05	0.36
ssbB/cilA	Streptococcus pneumoniae Rx1	50	72.05	0.36
ssbB/cilA	Streptococcus pneumoniae D39	50	72.05	0.36
ssbB/cilA	Streptococcus pneumoniae R6	50	72.05	0.36
ssbB/cilA	Streptococcus mitis SK321	50	72.05	0.36