Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EL185_RS19360 Genome accession   NZ_LR134321
Coordinates   4462919..4464184 (+) Length   421 a.a.
NCBI ID   WP_126492940.1    Uniprot ID   -
Organism   Shewanella baltica strain NCTC10737     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4457919..4469184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL185_RS19340 (NCTC10737_03894) ampD 4458111..4458674 (-) 564 WP_126492934.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  EL185_RS19345 (NCTC10737_03895) nadC 4458945..4459832 (+) 888 WP_126492936.1 carboxylating nicotinate-nucleotide diphosphorylase -
  EL185_RS21975 (NCTC10737_03896) - 4460558..4461013 (+) 456 WP_269471924.1 pilin -
  EL185_RS19355 (NCTC10737_03897) pilB 4461078..4462790 (+) 1713 WP_126492938.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EL185_RS19360 (NCTC10737_03898) pilC 4462919..4464184 (+) 1266 WP_126492940.1 type II secretion system F family protein Machinery gene
  EL185_RS19365 (NCTC10737_03899) pilD 4464228..4465154 (+) 927 WP_126492942.1 prepilin peptidase Machinery gene
  EL185_RS19370 (NCTC10737_03900) coaE 4465194..4465811 (+) 618 WP_126492943.1 dephospho-CoA kinase -
  EL185_RS19375 (NCTC10737_03901) zapD 4465804..4466538 (+) 735 WP_126492945.1 cell division protein ZapD -
  EL185_RS19380 (NCTC10737_03902) yacG 4466612..4466821 (+) 210 WP_006083355.1 DNA gyrase inhibitor YacG -
  EL185_RS19385 (NCTC10737_03903) mutT 4466898..4467290 (+) 393 WP_126492947.1 8-oxo-dGTP diphosphatase MutT -
  EL185_RS19390 (NCTC10737_03904) - 4467521..4468057 (+) 537 WP_006084374.1 thioredoxin family protein -
  EL185_RS19395 (NCTC10737_03905) - 4468122..4469048 (-) 927 WP_011848012.1 exopolyphosphatase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46483.71 Da        Isoelectric Point: 10.2290

>NTDB_id=1121465 EL185_RS19360 WP_126492940.1 4462919..4464184(+) (pilC) [Shewanella baltica strain NCTC10737]
MATATTARKPRANKNDKKSQPKIYTFEWKGLNRDGKKTGGELKGTTVAEIKSQLKQQGVNPKVVRKKASPFFARNPDIKA
MDIAMVTRQIATMLAAGVPLVTTIEMLGRGHEKQKMRELLGTVLSEIQSGIPLSDSLRPHRRYFDDLYVDLVAAGEHSGS
LDAVFDRIATYREKAEQLKSKIKKAMFYPAAVVVVAILVTTLLLLFVVPQFEEIFNSFGAELPAFTQFIIGISRFLQSSW
YIFFFAIVISIWLFIRAHRNSQVVRDRVDELVLKIPVIGNILHKAAMARFSRTLATTFAAGVPLIDGMESAAGASGNAVY
RKALLKVRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
LVGGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=1121465 EL185_RS19360 WP_126492940.1 4462919..4464184(+) (pilC) [Shewanella baltica strain NCTC10737]
ATGGCTACGGCAACCACAGCAAGAAAGCCTCGCGCCAATAAGAACGACAAAAAGAGCCAACCAAAAATCTATACCTTCGA
ATGGAAGGGGCTCAATCGTGATGGCAAAAAAACTGGCGGAGAGTTAAAGGGGACTACCGTAGCCGAAATAAAAAGTCAGC
TTAAACAGCAAGGCGTCAACCCAAAGGTTGTCCGCAAAAAAGCCTCGCCATTTTTCGCCCGTAATCCTGATATCAAGGCC
ATGGACATTGCCATGGTGACTCGGCAAATCGCCACTATGTTAGCCGCTGGCGTGCCTTTAGTGACCACCATAGAAATGCT
TGGTCGCGGTCACGAAAAACAAAAAATGCGCGAACTACTCGGCACTGTGCTATCAGAAATTCAATCGGGTATTCCACTTT
CAGACTCGTTACGTCCTCACAGACGTTACTTCGATGACTTATATGTCGACCTAGTCGCGGCAGGGGAGCATTCAGGCTCG
CTCGATGCGGTATTCGATCGTATTGCCACTTATAGGGAAAAAGCTGAGCAACTGAAATCTAAAATTAAAAAAGCCATGTT
TTATCCCGCTGCTGTAGTGGTGGTGGCAATTTTAGTGACCACTCTGCTACTACTCTTTGTGGTGCCACAATTCGAGGAAA
TTTTTAATAGCTTTGGTGCTGAACTCCCTGCATTTACCCAGTTCATTATTGGCATATCACGTTTTTTACAAAGTTCTTGG
TATATCTTCTTTTTTGCCATTGTCATCAGTATTTGGTTGTTTATACGTGCCCACCGTAATTCACAAGTCGTTCGGGATAG
AGTCGATGAGTTGGTGCTCAAAATTCCCGTTATCGGTAATATTTTGCATAAAGCTGCCATGGCACGCTTTTCACGCACCT
TAGCCACAACATTTGCCGCTGGCGTCCCCTTAATCGATGGTATGGAATCTGCCGCTGGCGCATCGGGTAATGCGGTCTAC
CGTAAAGCCTTACTAAAAGTACGCCAAGAAGTGATGGCAGGCATGCAAATGAACGTGGCTATGCGCACCACTGGACTATT
TCCCGATATGTTGATCCAAATGGTGATGATAGGCGAAGAGTCTGGATCACTGGATAACATGCTCAATAAAGTCGCCAATA
TTTATGAAATGCAAGTGGATGATGCCGTTGATGGCTTATCAAGCCTGATAGAGCCTATTATGATGGTGGTTATCGGGACA
CTTGTAGGTGGTTTGATTGTAGGCATGTACCTACCTATCTTCCAAATGGGAAATGTCGTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.43

93.824

0.511
  pilC Acinetobacter baylyi ADP1

50.126

94.299

0.473
  pilC Legionella pneumophila strain ERS1305867

49.257

95.962

0.473
  pilC Acinetobacter baumannii D1279779

49.497

94.537

0.468
  pilC Vibrio cholerae strain A1552

45.98

94.537

0.435
  pilC Vibrio campbellii strain DS40M4

43.171

97.387

0.42
  pilG Neisseria meningitidis 44/76-A

40.695

95.724

0.39
  pilG Neisseria gonorrhoeae MS11

40.796

95.487

0.39

Multiple sequence alignment