Detailed information NTG1121466

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EL185_RS19365
• Genome accession: NZ_LR134321
• Coordinates: 4464228..4465154 (+)
• Length: 308 a.a.
• NCBI ID: WP_126492942.1
• Uniprot ID: -
• Organism: Shewanella baltica strain NCTC10737
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4459228..4470154

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL185_RS21975 (NCTC10737_03896)	-	4460558..4461013 (+)	456	WP_269471924.1	pilin	-
EL185_RS19355 (NCTC10737_03897)	pilB	4461078..4462790 (+)	1713	WP_126492938.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EL185_RS19360 (NCTC10737_03898)	pilC	4462919..4464184 (+)	1266	WP_126492940.1	type II secretion system F family protein	Machinery gene
EL185_RS19365 (NCTC10737_03899)	pilD	4464228..4465154 (+)	927	WP_126492942.1	prepilin peptidase	Machinery gene
EL185_RS19370 (NCTC10737_03900)	coaE	4465194..4465811 (+)	618	WP_126492943.1	dephospho-CoA kinase	-
EL185_RS19375 (NCTC10737_03901)	zapD	4465804..4466538 (+)	735	WP_126492945.1	cell division protein ZapD	-
EL185_RS19380 (NCTC10737_03902)	yacG	4466612..4466821 (+)	210	WP_006083355.1	DNA gyrase inhibitor YacG	-
EL185_RS19385 (NCTC10737_03903)	mutT	4466898..4467290 (+)	393	WP_126492947.1	8-oxo-dGTP diphosphatase MutT	-
EL185_RS19390 (NCTC10737_03904)	-	4467521..4468057 (+)	537	WP_006084374.1	thioredoxin family protein	-
EL185_RS19395 (NCTC10737_03905)	-	4468122..4469048 (-)	927	WP_011848012.1	exopolyphosphatase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34364.91 Da
• Isoelectric Point: 7.7068

>NTDB_id=1121466 EL185_RS19365 WP_126492942.1 4464228..4465154(+) (pilD) [Shewanella baltica strain NCTC10737]
MNEFISLLGQPLVQSPWLFIALSFIFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHEDTVKKIGIEQLNKPIDAF
PEKYNLVVPGSACPKCKTSIKPWHNLPVLGWLILKGKCAACHAPISARYPVIEFITGLLIATLAWHFGPSWQFIFASILT
FVLVALTGIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAIIGAAAGYLSLWSIFWLFKILTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLVGAVVGITMIISKRLKQGNPIPFGPYIAAAGWIALLFGQQIVDWYLSTL

Nucleotide

• Length: 927 bp

>NTDB_id=1121466 EL185_RS19365 WP_126492942.1 4464228..4465154(+) (pilD) [Shewanella baltica strain NCTC10737]
ATGAATGAATTCATCTCCCTTTTAGGCCAGCCTCTAGTTCAGAGTCCTTGGCTGTTTATTGCGTTAAGCTTTATTTTTGC
CGCTACCATTGGTAGTTTTTTAAATGTGGTGATCCACAGATTTCCTGTGATGATGAAACGGGAGTGGCAGCAAGAATGTA
ATCAGTATTTGCAGGAATACCACGAAGACACAGTCAAAAAAATAGGGATAGAGCAACTCAATAAACCTATTGATGCCTTT
CCTGAAAAGTACAATCTTGTTGTACCGGGCTCAGCCTGCCCTAAATGTAAAACCTCAATTAAGCCTTGGCATAATTTACC
TGTATTAGGCTGGTTAATACTCAAAGGTAAATGCGCCGCCTGTCACGCCCCTATTTCCGCCCGCTACCCCGTTATTGAAT
TCATCACAGGTCTACTTATCGCAACTTTAGCTTGGCATTTTGGTCCAAGCTGGCAGTTTATTTTTGCTAGCATACTCACC
TTTGTGCTTGTAGCACTGACAGGTATCGATCTTGATGAGATGCTGCTCCCCGACCAAATGACGTTACCGTTACTTTGGCT
AGGCTTGATCATCAATCTAAATCATACCTTTGCGAGTCCAACCGATGCCATTATCGGTGCGGCGGCAGGCTATTTGAGCC
TGTGGTCCATTTTCTGGTTGTTTAAAATCCTCACAGGTAAAGAAGGCATGGGTTATGGCGACTTTAAATTACTCGCCGTT
TTCGGTGCTTGGCTTGGCTGGCAAATGCTGCCGCTGGTGATTTTACTTTCGTCCCTCGTTGGCGCAGTCGTTGGCATCAC
TATGATTATCAGTAAACGCCTCAAACAAGGTAATCCCATCCCATTTGGCCCTTATATTGCTGCCGCAGGCTGGATAGCCT
TGCTATTTGGGCAACAGATTGTCGATTGGTACCTATCGACACTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (158-266)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.525	95.779	0.494
pilD	Vibrio campbellii strain DS40M4	49.66	95.455	0.474
pilD	Acinetobacter nosocomialis M2	49.653	93.506	0.464
pilD	Acinetobacter baumannii D1279779	49.481	93.831	0.464
pilD	Neisseria gonorrhoeae MS11	44.33	94.481	0.419