Detailed information NTG1120914

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: EL115_RS08385
• Genome accession: NZ_LR134307
• Coordinates: 1672582..1672980 (-)
• Length: 132 a.a.
• NCBI ID: WP_006269995.1
• Uniprot ID: -
• Organism: Streptococcus milleri strain NCTC10708
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1667582..1677980

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL115_RS08360 (NCTC10708_01657)	-	1669305..1670504 (-)	1200	WP_126441770.1	acetate kinase	-
EL115_RS08365 (NCTC10708_01658)	comYH	1670551..1671504 (-)	954	WP_115263521.1	class I SAM-dependent methyltransferase	Machinery gene
EL115_RS08370 (NCTC10708_01659)	comGG	1671589..1671915 (-)	327	WP_003070783.1	competence type IV pilus minor pilin ComGG	-
EL115_RS08375 (NCTC10708_01660)	comGF/cglF	1671896..1672333 (-)	438	WP_126441771.1	competence type IV pilus minor pilin ComGF	Machinery gene
EL115_RS08380 (NCTC10708_01661)	comGE/cglE	1672317..1672610 (-)	294	WP_126441772.1	competence type IV pilus minor pilin ComGE	Machinery gene
EL115_RS08385 (NCTC10708_01662)	comYD	1672582..1672980 (-)	399	WP_006269995.1	competence type IV pilus minor pilin ComGD	Machinery gene
EL115_RS08390 (NCTC10708_01663)	comYC	1672970..1673287 (-)	318	WP_006269985.1	competence type IV pilus major pilin ComGC	Machinery gene
EL115_RS08395 (NCTC10708_01664)	comYB	1673284..1674306 (-)	1023	WP_126441773.1	competence type IV pilus assembly protein ComGB	Machinery gene
EL115_RS08400 (NCTC10708_01665)	comYA	1674248..1675189 (-)	942	WP_126441774.1	competence type IV pilus ATPase ComGA	Machinery gene
EL115_RS08405 (NCTC10708_01666)	-	1675259..1675624 (-)	366	WP_126441775.1	DUF1033 family protein	-
EL115_RS08410 (NCTC10708_01667)	glnA	1675812..1677158 (-)	1347	WP_006269977.1	type I glutamate--ammonia ligase	-
EL115_RS08415 (NCTC10708_01668)	-	1677197..1677556 (-)	360	WP_126441776.1	MerR family transcriptional regulator	-

Sequence

Protein

• Length: 132 a.a.
• Molecular weight: 15031.17 Da
• Isoelectric Point: 9.4205

>NTDB_id=1120914 EL115_RS08385 WP_006269995.1 1672582..1672980(-) (comYD) [Streptococcus milleri strain NCTC10708]
MQIKGFTLLESLLTLFMTSLLLLAVSGSVHSSFEQVEQQIFFLEFEHFYRESQKLSSAAQSQLDMNFSRERISNGYNHVA
VPRSIQAPEDLTLHFDKAGGNSSLGKVIFQTNKQTITYQLYLGNGKFKKTMR

Nucleotide

• Length: 399 bp

>NTDB_id=1120914 EL115_RS08385 WP_006269995.1 1672582..1672980(-) (comYD) [Streptococcus milleri strain NCTC10708]
TTGCAGATTAAAGGTTTTACGCTTTTGGAAAGTTTGCTGACCTTATTTATGACGAGCCTCTTATTGCTTGCTGTGTCAGG
TTCAGTACATTCATCGTTTGAGCAAGTAGAACAGCAAATTTTCTTTCTAGAGTTTGAGCATTTTTATCGGGAAAGTCAGA
AGTTGAGTAGTGCAGCTCAAAGTCAGTTGGACATGAATTTTTCTCGCGAGAGGATTTCCAATGGTTACAACCATGTGGCA
GTTCCTCGCTCGATTCAGGCTCCGGAAGACCTGACACTTCATTTTGACAAGGCAGGCGGTAATTCATCGCTCGGAAAGGT
TATCTTTCAGACAAATAAGCAAACAATTACGTATCAATTATATCTAGGAAATGGAAAATTTAAGAAAACAATGCGTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus gordonii str. Challis substr. CH1	60	98.485	0.591
comGD/cglD	Streptococcus mitis NCTC 12261	57.364	97.727	0.561
comGD/cglD	Streptococcus mitis SK321	57.48	96.212	0.553
comGD/cglD	Streptococcus pneumoniae Rx1	57.48	96.212	0.553
comGD/cglD	Streptococcus pneumoniae D39	57.48	96.212	0.553
comGD/cglD	Streptococcus pneumoniae R6	57.48	96.212	0.553
comGD/cglD	Streptococcus pneumoniae TIGR4	56.693	96.212	0.545
comYD	Streptococcus mutans UA140	49.231	98.485	0.485
comYD	Streptococcus mutans UA159	49.231	98.485	0.485