Detailed information NTG1120543

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: EL096_RS04880
• Genome accession: NZ_LR134294
• Coordinates: 929436..929906 (-)
• Length: 156 a.a.
• NCBI ID: WP_050084733.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain NCTC12977
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 924436..934906

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL096_RS04850 (NCTC12977_00953)	-	925011..925946 (-)	936	WP_000036043.1	manganese-dependent inorganic pyrophosphatase	-
EL096_RS04855 (NCTC12977_00954)	-	926017..926316 (-)	300	WP_000349601.1	GIY-YIG nuclease family protein	-
EL096_RS04860 (NCTC12977_00955)	-	926306..927055 (-)	750	WP_000390784.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
EL096_RS04865 (NCTC12977_00956)	-	927109..927468 (-)	360	WP_000689600.1	S1 RNA-binding domain-containing protein	-
EL096_RS04870 (NCTC12977_00957)	-	927470..928870 (-)	1401	WP_000339024.1	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	-
EL096_RS04875 (NCTC12977_00958)	rpsR	929165..929404 (-)	240	WP_000068664.1	30S ribosomal protein S18	-
EL096_RS04880 (NCTC12977_00959)	ssbA	929436..929906 (-)	471	WP_050084733.1	single-stranded DNA-binding protein SsbA	Machinery gene
EL096_RS04885 (NCTC12977_00960)	rpsF	929918..930208 (-)	291	WP_001151785.1	30S ribosomal protein S6	-
EL096_RS04890 (NCTC12977_00961)	asnS	930361..931704 (-)	1344	WP_000167151.1	asparagine--tRNA ligase	-
EL096_RS11360 (NCTC12977_00962)	-	931723..932088 (-)	366	WP_050084731.1	VOC family protein	-
EL096_RS04895 (NCTC12977_00963)	-	932081..933268 (-)	1188	WP_050221144.1	pyridoxal phosphate-dependent aminotransferase	-
EL096_RS04900 (NCTC12977_00964)	-	933265..933753 (-)	489	WP_000747253.1	DUF5590 domain-containing protein	-
EL096_RS04910 (NCTC12977_00965)	-	934074..934622 (+)	549	WP_000039618.1	NADPH-dependent FMN reductase	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17324.19 Da
• Isoelectric Point: 5.2065

>NTDB_id=1120543 EL096_RS04880 WP_050084733.1 929436..929906(-) (ssbA) [Streptococcus pneumoniae strain NCTC12977]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTASYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=1120543 EL096_RS04880 WP_050084733.1 929436..929906(-) (ssbA) [Streptococcus pneumoniae strain NCTC12977]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAGCTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	55.814	100	0.615
ssb	Latilactobacillus sakei subsp. sakei 23K	54.118	100	0.59
ssbB/cilA	Streptococcus pneumoniae TIGR4	51.282	75	0.385
ssbB	Bacillus subtilis subsp. subtilis str. 168	55.66	67.949	0.378
ssbB/cilA	Streptococcus mitis SK321	50.427	75	0.378
ssbB/cilA	Streptococcus mitis NCTC 12261	50.427	75	0.378
ssbB	Streptococcus sobrinus strain NIDR 6715-7	54.128	69.872	0.378
ssbB/cilA	Streptococcus pneumoniae Rx1	52.294	69.872	0.365
ssbB/cilA	Streptococcus pneumoniae D39	52.294	69.872	0.365
ssbB/cilA	Streptococcus pneumoniae R6	52.294	69.872	0.365