Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | EL191_RS13545 | Genome accession | NZ_LR134290 |
| Coordinates | 2934624..2934947 (-) | Length | 107 a.a. |
| NCBI ID | WP_013715876.1 | Uniprot ID | A0A379IU73 |
| Organism | Ectopseudomonas mendocina strain NCTC10897 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2929624..2939947
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL191_RS13540 (NCTC10897_02725) | recC | 2931044..2934460 (-) | 3417 | WP_041981022.1 | exodeoxyribonuclease V subunit gamma | - |
| EL191_RS13545 (NCTC10897_02726) | comE1/comEA | 2934624..2934947 (-) | 324 | WP_013715876.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| EL191_RS13550 (NCTC10897_02727) | - | 2935215..2936069 (-) | 855 | WP_041981021.1 | helix-turn-helix transcriptional regulator | - |
| EL191_RS13555 (NCTC10897_02728) | - | 2936674..2937873 (+) | 1200 | WP_080764317.1 | MFS transporter | - |
| EL191_RS13565 (NCTC10897_02730) | - | 2938174..2938530 (-) | 357 | WP_013716019.1 | MerR family transcriptional regulator | - |
| EL191_RS13570 (NCTC10897_02731) | ihfA | 2938511..2938813 (-) | 303 | WP_003243414.1 | integration host factor subunit alpha | - |
Sequence
Protein
Download Length: 107 a.a. Molecular weight: 11212.75 Da Isoelectric Point: 4.5680
>NTDB_id=1120326 EL191_RS13545 WP_013715876.1 2934624..2934947(-) (comE1/comEA) [Ectopseudomonas mendocina strain NCTC10897]
MMKIYLSSVLFAVLTSLSLAASAVETSKTEPAATASAQVSQAVTVNLNTADAETLQRELAGIGATKAQAIVAYREAHGNF
ASVDELLEVKGIGEATLDKNRDKLMVD
MMKIYLSSVLFAVLTSLSLAASAVETSKTEPAATASAQVSQAVTVNLNTADAETLQRELAGIGATKAQAIVAYREAHGNF
ASVDELLEVKGIGEATLDKNRDKLMVD
Nucleotide
Download Length: 324 bp
>NTDB_id=1120326 EL191_RS13545 WP_013715876.1 2934624..2934947(-) (comE1/comEA) [Ectopseudomonas mendocina strain NCTC10897]
ATGATGAAAATCTACCTCTCCTCTGTGTTGTTCGCCGTTCTCACCTCCCTCTCCCTTGCTGCCTCGGCGGTAGAAACTTC
GAAGACCGAACCAGCCGCTACGGCTTCTGCGCAGGTTTCTCAGGCGGTCACCGTCAATCTGAATACCGCTGATGCCGAGA
CTCTCCAGCGCGAGTTGGCGGGTATCGGGGCGACCAAGGCGCAGGCGATCGTGGCCTATCGCGAGGCTCACGGAAACTTC
GCTTCGGTTGACGAGTTACTTGAGGTCAAAGGTATCGGGGAGGCGACTCTGGACAAGAATCGCGACAAGCTCATGGTCGA
TTGA
ATGATGAAAATCTACCTCTCCTCTGTGTTGTTCGCCGTTCTCACCTCCCTCTCCCTTGCTGCCTCGGCGGTAGAAACTTC
GAAGACCGAACCAGCCGCTACGGCTTCTGCGCAGGTTTCTCAGGCGGTCACCGTCAATCTGAATACCGCTGATGCCGAGA
CTCTCCAGCGCGAGTTGGCGGGTATCGGGGCGACCAAGGCGCAGGCGATCGTGGCCTATCGCGAGGCTCACGGAAACTTC
GCTTCGGTTGACGAGTTACTTGAGGTCAAAGGTATCGGGGAGGCGACTCTGGACAAGAATCGCGACAAGCTCATGGTCGA
TTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
46.847 |
100 |
0.486 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
46.296 |
100 |
0.467 |
| comEA | Vibrio cholerae C6706 |
50 |
89.72 |
0.449 |
| comEA | Vibrio cholerae strain A1552 |
50 |
89.72 |
0.449 |
| comEA | Legionella pneumophila str. Paris |
43.434 |
92.523 |
0.402 |
| comEA | Legionella pneumophila strain ERS1305867 |
43.434 |
92.523 |
0.402 |
| comEA | Streptococcus thermophilus LMD-9 |
51.852 |
75.701 |
0.393 |
| comEA | Acinetobacter baylyi ADP1 |
46.591 |
82.243 |
0.383 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
40.196 |
95.327 |
0.383 |