Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   EW023_RS09285 Genome accession   NZ_LR130239
Coordinates   1832693..1833964 (-) Length   423 a.a.
NCBI ID   WP_050336413.1    Uniprot ID   A0A5S4TF10
Organism   Streptococcus pyogenes strain PS003 isolate PS003     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context


Location: 1827693..1838964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW023_RS09260 - 1829662..1829967 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  EW023_RS09265 ruvX 1829979..1830398 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  EW023_RS09270 - 1830395..1830664 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  EW023_RS09275 spx 1830779..1831177 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  EW023_RS09280 recA 1831468..1832604 (-) 1137 WP_023612576.1 recombinase RecA Machinery gene
  EW023_RS09285 cinA 1832693..1833964 (-) 1272 WP_050336413.1 competence/damage-inducible protein A Machinery gene
  EW023_RS09290 - 1834033..1834593 (-) 561 WP_023611248.1 DNA-3-methyladenine glycosylase I -
  EW023_RS09295 ruvA 1834603..1835199 (-) 597 WP_023612588.1 Holliday junction branch migration protein RuvA -
  EW023_RS09300 - 1835201..1836421 (-) 1221 WP_002992187.1 MDR family MFS transporter -
  EW023_RS09305 mutL 1836432..1838414 (-) 1983 WP_023612567.1 DNA mismatch repair endonuclease MutL -

Sequence


Protein


Download         Length: 423 a.a.        Molecular weight: 45980.70 Da        Isoelectric Point: 4.8322

>NTDB_id=1116700 EW023_RS09285 WP_050336413.1 1832693..1833964(-) (cinA) [Streptococcus pyogenes strain PS003 isolate PS003]
MKAELIAVGTEILTGQIVNTNAQFLSEKMAELGIDVYFQTAVGDNEERLLSVITTASQRSDLVILCGGLGPTKDDLTKQT
LAKYLRKDLVYDEQACQKLDDFFAKRKPSSRTPNNERQAQVIEGSISLPNKTGLAVGGFITVDGISYVVLPGPPSELKPM
VNEELVPLLSKQYSTLYSKVLRFFGIGESQLVTVLSDFIENQTDPTIAPYAKTGEVTLRLSTKTENQALADKKLGQLEAQ
LLSRKTLEGQPLADVFYGYGEDNSLARETFELLVKYDKTITAAESLTAGLFQSTLASFPGASQVFNGGFVTYSMEEKAKM
LGLPLEELKSHGVVSAYTAEGMAEQARLLTGADIGVSLTGVAGPDMLEEQPAGTVFIGLATQNKVESIKVLISGRSRLDV
RYIATLHAFNMVRKTLLKLENLL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=1116700 EW023_RS09285 WP_050336413.1 1832693..1833964(-) (cinA) [Streptococcus pyogenes strain PS003 isolate PS003]
ATGAAAGCTGAACTGATTGCAGTAGGTACCGAAATTTTGACTGGTCAAATTGTGAATACCAATGCTCAATTTCTGTCGGA
AAAAATGGCAGAGCTAGGTATTGATGTCTATTTTCAAACGGCTGTTGGGGACAACGAGGAGCGTTTACTTTCAGTGATTA
CAACTGCTAGTCAGCGTAGTGACTTGGTGATTTTATGTGGTGGCCTTGGTCCAACGAAAGATGATTTAACCAAACAAACT
TTAGCAAAGTACCTTAGGAAAGACTTGGTTTATGATGAGCAAGCTTGTCAGAAACTAGATGACTTTTTTGCTAAGCGCAA
GCCTTCATCACGGACACCAAATAATGAGCGACAGGCACAAGTGATTGAAGGGTCAATCTCTTTGCCAAATAAAACTGGTC
TTGCGGTTGGTGGGTTCATCACAGTCGATGGTATTAGTTATGTTGTCTTACCGGGTCCTCCAAGTGAATTGAAGCCGATG
GTAAATGAAGAATTGGTACCACTTCTGTCAAAACAATACAGTACATTGTATTCAAAGGTACTACGCTTTTTTGGTATTGG
GGAAAGTCAGTTGGTAACAGTCTTGTCAGATTTTATTGAGAATCAAACTGATCCAACCATTGCTCCGTATGCTAAGACTG
GCGAAGTGACTCTTCGCTTATCAACAAAAACTGAAAACCAAGCTCTGGCAGATAAAAAGTTAGGTCAGCTAGAAGCGCAG
CTACTATCCCGAAAAACTCTTGAAGGTCAACCCTTAGCTGATGTCTTTTATGGCTATGGGGAGGATAATTCCTTAGCGCG
TGAGACATTTGAGCTCTTAGTAAAATATGATAAGACAATTACAGCAGCAGAAAGTCTAACCGCGGGATTATTTCAGTCAA
CTTTGGCGAGTTTTCCAGGAGCTTCTCAAGTATTCAATGGAGGCTTTGTGACTTATAGCATGGAAGAAAAAGCGAAAATG
CTAGGCCTTCCTTTAGAGGAGTTGAAATCGCATGGCGTTGTTAGTGCTTATACGGCCGAGGGGATGGCGGAGCAAGCAAG
GTTATTGACTGGTGCTGATATTGGGGTAAGTTTAACAGGTGTTGCCGGACCAGATATGTTGGAGGAACAGCCTGCAGGTA
CAGTTTTCATTGGTCTTGCCACTCAAAATAAGGTAGAATCAATAAAGGTTTTGATTAGCGGGCGAAGTCGTTTGGATGTG
CGCTATATCGCTACTTTACATGCCTTTAATATGGTCCGTAAAACTTTATTAAAACTTGAGAATTTGCTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5S4TF10

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

69.504

100

0.695

  cinA Streptococcus mitis SK321

69.784

98.582

0.688

  cinA Streptococcus mitis NCTC 12261

69.305

98.582

0.683

  cinA Streptococcus pneumoniae TIGR4

68.345

98.582

0.674

  cinA Streptococcus pneumoniae Rx1

68.345

98.582

0.674

  cinA Streptococcus pneumoniae R6

68.345

98.582

0.674

  cinA Streptococcus pneumoniae D39

68.106

98.582

0.671

  cinA Streptococcus suis isolate S10

53.125

98.345

0.522

  cinA Bacillus subtilis subsp. subtilis str. 168

46.651

98.818

0.461


Multiple sequence alignment