Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KR485_RS21400 Genome accession   NZ_LR027557
Coordinates   4808462..4809670 (-) Length   402 a.a.
NCBI ID   WP_078820264.1    Uniprot ID   -
Organism   Pseudomonas synxantha strain 10586     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4803462..4814670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KR485_RS21365 - 4804683..4804856 (-) 174 WP_005784671.1 DUF3094 family protein -
  KR485_RS21370 - 4804910..4805539 (-) 630 WP_003188431.1 DUF1780 domain-containing protein -
  KR485_RS21375 - 4805814..4806503 (+) 690 WP_216090727.1 energy-coupling factor ABC transporter permease -
  KR485_RS21380 - 4806570..4806785 (+) 216 WP_003171680.1 hypothetical protein -
  KR485_RS21385 yacG 4806782..4806982 (-) 201 WP_003188437.1 DNA gyrase inhibitor YacG -
  KR485_RS21390 coaE 4806979..4807602 (-) 624 WP_032877844.1 dephospho-CoA kinase -
  KR485_RS21395 pilD 4807599..4808465 (-) 867 WP_282442910.1 A24 family peptidase Machinery gene
  KR485_RS21400 pilC 4808462..4809670 (-) 1209 WP_078820264.1 type II secretion system F family protein Machinery gene
  KR485_RS21405 - 4809870..4810283 (+) 414 WP_005784685.1 pilin -
  KR485_RS21415 - 4810570..4810875 (+) 306 WP_216090728.1 DUF6388 family protein -
  KR485_RS21420 nadC 4810950..4811798 (-) 849 WP_032877839.1 carboxylating nicotinate-nucleotide diphosphorylase -
  KR485_RS21425 - 4812044..4814197 (+) 2154 WP_216090729.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43915.37 Da        Isoelectric Point: 10.0984

>NTDB_id=1115761 KR485_RS21400 WP_078820264.1 4808462..4809670(-) (pilC) [Pseudomonas synxantha strain 10586]
MNDTSTIYAWEGINRKGRRVTGQTAGDSLALIKAQLRQQGICPERVRKRPRSRSAFTPRILPADIALFTRQLATLLKAGI
PLLQAFDIISEGFENQQVRELVKALKQQIASGNNLAAALRLHPRYFDDLYCNLVAAGEQAGALETLLERVAIHLEKSQQL
KARIKKAMTYPVAVLVVATLVSTVLLIHVVPQFQHLFAGVDSQLPGFTLGVIALSEFLQQAWWILVLSLAVGVGGLRHAY
RRYPGFRHWLQASLLKAPLAGKLLQKTAVARYARTLSTTFAAGVPLVQALGSVAGAVGNDPFKQAIERMRHDVSTGMQLN
QSMHSCGLFPGMAIQMTAIGEESGTLDRMLEKVANHYESDVDTLVDNLTSLMEPLIMVVLGAIVGALVIAMYLPVFQLGT
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=1115761 KR485_RS21400 WP_078820264.1 4808462..4809670(-) (pilC) [Pseudomonas synxantha strain 10586]
ATGAACGACACGTCAACGATCTATGCCTGGGAAGGCATCAACCGCAAAGGACGCAGGGTGACCGGGCAAACCGCTGGCGA
CAGCCTTGCGCTGATCAAGGCACAACTGCGCCAGCAAGGGATCTGCCCCGAGCGTGTGCGCAAGAGGCCTCGATCACGTT
CGGCTTTCACCCCGCGAATCCTGCCAGCCGATATCGCCCTGTTTACCCGACAGTTGGCGACCTTGCTCAAAGCCGGGATC
CCGCTGCTGCAAGCCTTCGACATCATCAGTGAGGGTTTTGAAAACCAGCAGGTGCGTGAACTGGTCAAGGCGTTGAAACA
ACAGATCGCCAGCGGCAATAACCTGGCCGCAGCGCTACGCCTGCACCCGCGTTATTTCGATGACCTGTACTGCAACCTGG
TAGCTGCCGGAGAACAGGCCGGGGCTCTGGAAACCCTGCTGGAGCGCGTGGCGATTCATCTGGAAAAAAGCCAACAGCTC
AAAGCCAGGATCAAAAAAGCCATGACTTACCCTGTCGCAGTCCTGGTAGTCGCGACACTGGTCAGCACAGTGCTGTTGAT
ACACGTCGTGCCTCAGTTCCAGCATCTGTTTGCCGGGGTCGACAGCCAACTGCCCGGGTTTACCCTGGGGGTCATTGCCC
TGTCCGAGTTCTTGCAACAAGCGTGGTGGATACTCGTGCTGAGCCTGGCCGTGGGGGTGGGCGGGCTGCGCCACGCCTAC
CGCCGTTACCCTGGCTTTCGCCATTGGCTGCAAGCGAGTTTGTTGAAAGCGCCTCTGGCAGGCAAACTGCTGCAAAAAAC
CGCCGTCGCCCGCTACGCCCGCACGCTTTCGACCACGTTTGCAGCGGGTGTCCCGCTGGTCCAGGCACTGGGCTCGGTAG
CCGGAGCCGTCGGCAATGACCCCTTCAAACAGGCAATCGAACGTATGCGCCACGATGTATCCACAGGCATGCAGTTGAAT
CAATCCATGCACAGCTGCGGTTTGTTTCCCGGCATGGCGATCCAGATGACCGCCATTGGAGAGGAGTCCGGCACCCTGGA
CCGGATGCTGGAAAAAGTCGCGAACCACTACGAGTCGGACGTAGACACCCTGGTCGATAACCTCACCAGCCTGATGGAGC
CGCTGATCATGGTTGTCCTGGGGGCCATTGTCGGCGCGCTGGTGATTGCAATGTACCTGCCGGTCTTTCAATTGGGTACG
GCCTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.69

98.756

0.58
  pilC Acinetobacter baylyi ADP1

50.505

98.507

0.498
  pilC Acinetobacter baumannii D1279779

49.114

98.259

0.483
  pilC Legionella pneumophila strain ERS1305867

48.354

98.259

0.475
  pilC Vibrio cholerae strain A1552

39.34

98.01

0.386
  pilC Thermus thermophilus HB27

37.871

100

0.381
  pilG Neisseria gonorrhoeae MS11

40.157

94.776

0.381
  pilG Neisseria meningitidis 44/76-A

39.37

94.776

0.373
  pilC Vibrio campbellii strain DS40M4

38.01

97.512

0.371

Multiple sequence alignment