Detailed information NTG1115760

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KR485_RS21395
• Genome accession: NZ_LR027557
• Coordinates: 4807599..4808465 (-)
• Length: 288 a.a.
• NCBI ID: WP_282442910.1
• Uniprot ID: -
• Organism: Pseudomonas synxantha strain 10586
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4802599..4813465

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KR485_RS21360	-	4803324..4804622 (-)	1299	WP_078820261.1	NAD(P)/FAD-dependent oxidoreductase	-
KR485_RS21365	-	4804683..4804856 (-)	174	WP_005784671.1	DUF3094 family protein	-
KR485_RS21370	-	4804910..4805539 (-)	630	WP_003188431.1	DUF1780 domain-containing protein	-
KR485_RS21375	-	4805814..4806503 (+)	690	WP_216090727.1	energy-coupling factor ABC transporter permease	-
KR485_RS21380	-	4806570..4806785 (+)	216	WP_003171680.1	hypothetical protein	-
KR485_RS21385	yacG	4806782..4806982 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
KR485_RS21390	coaE	4806979..4807602 (-)	624	WP_032877844.1	dephospho-CoA kinase	-
KR485_RS21395	pilD	4807599..4808465 (-)	867	WP_282442910.1	A24 family peptidase	Machinery gene
KR485_RS21400	pilC	4808462..4809670 (-)	1209	WP_078820264.1	type II secretion system F family protein	Machinery gene
KR485_RS21405	-	4809870..4810283 (+)	414	WP_005784685.1	pilin	-
KR485_RS21415	-	4810570..4810875 (+)	306	WP_216090728.1	DUF6388 family protein	-
KR485_RS21420	nadC	4810950..4811798 (-)	849	WP_032877839.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31990.31 Da
• Isoelectric Point: 7.8698

>NTDB_id=1115760 KR485_RS21395 WP_282442910.1 4807599..4808465(-) (pilD) [Pseudomonas synxantha strain 10586]
MSLLLSEQHWAFACMALVLGLIIGSFINVLVWRLPRMLEREWRAQAHEVLGLPTEPAGPVYNLMRPNSCCPRCNQPIRPW
ENIPLLSFLMLRGRCAHCRDPISVRYPLTEVTCALITAAVAWHFGFGWQAAAVMLLSWGLLAMSLIDLDHQLLPDVLVLP
LLWLGLVINSADLLATLPDALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLMGVF
AGLILLRLRKAQTSTPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=1115760 KR485_RS21395 WP_282442910.1 4807599..4808465(-) (pilD) [Pseudomonas synxantha strain 10586]
TTGAGCCTGCTGCTGAGCGAGCAGCACTGGGCGTTTGCCTGCATGGCACTGGTGCTCGGCCTGATCATCGGCAGTTTCAT
CAACGTGCTGGTCTGGCGCCTGCCCAGAATGCTCGAACGCGAATGGCGTGCCCAGGCCCATGAGGTCCTCGGCCTGCCAA
CCGAGCCCGCCGGGCCGGTGTACAACCTGATGCGCCCGAACTCCTGCTGTCCGCGCTGCAACCAGCCGATTCGGCCCTGG
GAAAATATCCCGCTGCTCAGCTTCCTGATGCTCCGGGGTCGTTGCGCCCATTGCCGTGACCCCATCAGCGTCCGCTATCC
CCTGACCGAAGTGACGTGCGCGCTGATCACTGCCGCTGTTGCCTGGCATTTCGGCTTCGGCTGGCAAGCCGCTGCGGTGA
TGTTGCTGAGCTGGGGCTTGCTGGCAATGAGCCTGATTGACCTGGACCACCAATTGCTGCCGGACGTGCTGGTCTTGCCG
CTGCTCTGGCTGGGGCTGGTTATCAACAGCGCTGACCTGTTGGCGACACTGCCCGACGCATTGTGGGGCGCGGTCATTGG
CTACATGAGCCTATGGAGCGTGTTCTGGTTGTTCAAGCTGGTCACCGGCAAGGATGGCATGGGCCATGGCGATTTCAAGT
TATTGGCATTGCTGGGGGCCTGGGGTGGCTGGCAGATCCTGCCGATGACGTTGCTGATGGCCTCACTGATGGGCGTGTTT
GCAGGGCTGATCCTGCTGCGTTTGCGCAAGGCCCAAACGTCGACGCCGATGCCCTTTGGGCCGTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.971	96.875	0.503
pilD	Vibrio campbellii strain DS40M4	48.561	96.528	0.469
pilD	Acinetobacter nosocomialis M2	47.985	94.792	0.455
pilD	Acinetobacter baumannii D1279779	46.739	95.833	0.448
pilD	Neisseria gonorrhoeae MS11	46.875	88.889	0.417