Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LACPI_RS09965 Genome accession   NZ_LN774769
Coordinates   2062770..2063210 (-) Length   146 a.a.
NCBI ID   WP_047916169.1    Uniprot ID   A0A0D6DYW6
Organism   Lactococcus piscium MKFS47     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2057770..2068210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LACPI_RS09915 - 2057784..2058002 (-) 219 WP_047916161.1 hypothetical protein -
  LACPI_RS12380 (LACPI_1955) - 2057995..2058507 (-) 513 WP_068876856.1 DUF3310 domain-containing protein -
  LACPI_RS12785 (LACPI_1956) - 2058497..2058634 (-) 138 WP_157761142.1 hypothetical protein -
  LACPI_RS09925 (LACPI_1957) - 2058631..2059023 (-) 393 WP_047916162.1 YopX family protein -
  LACPI_RS09930 (LACPI_1958) - 2059020..2059283 (-) 264 WP_047916163.1 winged helix-turn-helix domain-containing protein -
  LACPI_RS09935 (LACPI_1959) - 2059295..2060146 (-) 852 WP_231858752.1 DNA-methyltransferase -
  LACPI_RS09940 (LACPI_1960) - 2060152..2060544 (-) 393 WP_047916164.1 RusA family crossover junction endodeoxyribonuclease -
  LACPI_RS09945 (LACPI_1961) - 2060541..2060729 (-) 189 WP_047916165.1 hypothetical protein -
  LACPI_RS09950 (LACPI_1962) - 2060738..2061616 (-) 879 WP_047916166.1 ATP-binding protein -
  LACPI_RS09955 (LACPI_1963) - 2061628..2062395 (-) 768 WP_047916167.1 conserved phage C-terminal domain-containing protein -
  LACPI_RS12790 - 2062396..2062551 (-) 156 WP_157761143.1 hypothetical protein -
  LACPI_RS09965 (LACPI_1964) ssb 2062770..2063210 (-) 441 WP_047916169.1 single-stranded DNA-binding protein Machinery gene
  LACPI_RS09970 (LACPI_1965) - 2063207..2063827 (-) 621 WP_047916170.1 ERF family protein -
  LACPI_RS09975 (LACPI_1966) - 2063829..2064239 (-) 411 WP_047916171.1 hypothetical protein -
  LACPI_RS09980 (LACPI_1967) - 2064243..2064503 (-) 261 WP_047916172.1 hypothetical protein -
  LACPI_RS09985 (LACPI_1968) - 2064752..2065030 (-) 279 WP_047916173.1 helix-turn-helix domain-containing protein -
  LACPI_RS09990 (LACPI_1969) - 2065103..2065291 (-) 189 WP_050703042.1 helix-turn-helix domain-containing protein -
  LACPI_RS09995 (LACPI_1970) - 2065408..2065599 (+) 192 WP_047916174.1 hypothetical protein -
  LACPI_RS10000 (LACPI_1971) - 2065576..2065809 (-) 234 WP_047916175.1 hypothetical protein -
  LACPI_RS10005 (LACPI_1972) - 2065867..2066052 (-) 186 WP_047916176.1 hypothetical protein -
  LACPI_RS10010 (LACPI_1973) - 2066045..2066578 (-) 534 WP_050703043.1 ORF6C domain-containing protein -
  LACPI_RS10015 (LACPI_1974) - 2066575..2067393 (-) 819 WP_157761144.1 hypothetical protein -
  LACPI_RS10020 (LACPI_1975) - 2067467..2067766 (-) 300 WP_047916178.1 DUF559 domain-containing protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16476.29 Da        Isoelectric Point: 5.1848

>NTDB_id=1113993 LACPI_RS09965 WP_047916169.1 2062770..2063210(-) (ssb) [Lactococcus piscium MKFS47]
MINNVTLVGRLTKDVELKYTPSNVANVSFTLAVNRTFKNANGEREADFINCVIWRQAAENFANWVKKGNLIGITGRIQTR
NYENAQGQRVYVTEVVAENFQMLESRNQQQGQQQAQPQQATQQQAKQPDPFAEGTPTSLNDDDLPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=1113993 LACPI_RS09965 WP_047916169.1 2062770..2063210(-) (ssb) [Lactococcus piscium MKFS47]
ATGATTAATAACGTAACTTTAGTAGGTCGCTTGACAAAAGATGTAGAACTTAAATACACACCGTCAAACGTTGCAAACGT
GAGTTTCACACTAGCAGTAAACAGAACTTTCAAAAATGCAAACGGAGAACGCGAAGCGGATTTCATCAACTGTGTTATCT
GGAGACAAGCTGCCGAAAATTTCGCAAACTGGGTTAAAAAAGGTAATTTAATCGGTATCACAGGTAGAATCCAAACACGA
AACTACGAGAATGCACAAGGTCAACGAGTTTATGTGACGGAGGTTGTCGCTGAAAACTTCCAAATGCTTGAAAGTCGTAA
CCAGCAACAAGGGCAACAGCAGGCGCAACCACAACAGGCTACACAGCAACAAGCTAAGCAACCTGACCCATTTGCAGAAG
GAACACCAACGAGCCTGAATGATGATGACCTGCCATTTTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.664
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.744

100

0.61
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.096

100

0.411
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.153

76.027

0.404
  ssb Vibrio cholerae strain A1552

31.977

100

0.377
  ssb Neisseria gonorrhoeae MS11

31.977

100

0.377
  ssb Neisseria meningitidis MC58

31.395

100

0.37
  ssbB/cilA Streptococcus pneumoniae TIGR4

48.624

74.658

0.363

Multiple sequence alignment