Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   LACPI_RS01205 Genome accession   NZ_LN774769
Coordinates   248912..249229 (+) Length   105 a.a.
NCBI ID   WP_082095458.1    Uniprot ID   -
Organism   Lactococcus piscium MKFS47     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 243912..254229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LACPI_RS01195 (LACPI_0226) comGA/cglA/cilD 246972..247913 (+) 942 WP_047914712.1 competence type IV pilus ATPase ComGA Machinery gene
  LACPI_RS01200 (LACPI_0227) comGB 247876..248880 (+) 1005 WP_167594955.1 competence type IV pilus assembly protein ComGB -
  LACPI_RS01205 (LACPI_0228) comYC 248912..249229 (+) 318 WP_082095458.1 competence type IV pilus major pilin ComGC Machinery gene
  LACPI_RS12700 (LACPI_0229) comGD 249201..249629 (+) 429 WP_269448934.1 competence type IV pilus minor pilin ComGD -
  LACPI_RS01215 (LACPI_0230) comGE 249601..249906 (+) 306 WP_047914715.1 competence type IV pilus minor pilin ComGE -
  LACPI_RS01220 (LACPI_0231) comGF 249881..250324 (+) 444 WP_047914716.1 competence type IV pilus minor pilin ComGF -
  LACPI_RS01225 (LACPI_0232) comGG 250336..250620 (+) 285 WP_050702932.1 competence type IV pilus minor pilin ComGG -
  LACPI_RS01230 (LACPI_0233) - 250837..251256 (+) 420 WP_047914717.1 GNAT family N-acetyltransferase -
  LACPI_RS01235 (LACPI_0234) ispE 251355..252206 (+) 852 WP_047914718.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase -
  LACPI_RS01240 (LACPI_0235) - 252336..252785 (+) 450 WP_047914719.1 zinc-dependent MarR family transcriptional regulator -
  LACPI_RS01245 (LACPI_0236) - 252785..253528 (+) 744 WP_047914720.1 metal ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11627.81 Da        Isoelectric Point: 9.3850

>NTDB_id=1113969 LACPI_RS01205 WP_082095458.1 248912..249229(+) (comYC) [Lactococcus piscium MKFS47]
MMHKKMVAAFTLLEMLIVLMIISILILLFVPNLSSQKTTIKETGNAAVVKVITSQAELYQLNHSGKVSLKLLLENGNITQ
QQVDAYHAYYALAKTKGEKPEIPAD

Nucleotide


Download         Length: 318 bp        

>NTDB_id=1113969 LACPI_RS01205 WP_082095458.1 248912..249229(+) (comYC) [Lactococcus piscium MKFS47]
ATGATGCATAAAAAAATGGTAGCCGCTTTTACTTTACTAGAGATGTTGATCGTTTTGATGATTATCAGTATCCTCATCTT
GCTATTTGTCCCAAATTTATCATCTCAAAAGACGACGATTAAGGAAACTGGTAATGCTGCTGTGGTTAAAGTAATTACGT
CTCAGGCAGAATTATACCAGCTTAATCATTCGGGAAAAGTATCTTTGAAACTATTACTAGAAAACGGTAATATCACACAA
CAACAGGTGGACGCGTACCATGCTTATTATGCACTGGCTAAAACCAAGGGTGAGAAACCAGAAATTCCGGCAGATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Lactococcus lactis subsp. cremoris KW2

58.511

89.524

0.524
  comYC Streptococcus gordonii str. Challis substr. CH1

58.242

86.667

0.505
  comYC Streptococcus mutans UA140

60

80.952

0.486
  comYC Streptococcus mutans UA159

60

80.952

0.486
  comGC/cglC Streptococcus mitis NCTC 12261

52.632

90.476

0.476
  comGC/cglC Streptococcus mitis SK321

54.945

86.667

0.476
  comGC/cglC Streptococcus pneumoniae TIGR4

53.933

84.762

0.457
  comGC/cglC Streptococcus pneumoniae Rx1

53.333

85.714

0.457
  comGC/cglC Streptococcus pneumoniae R6

53.333

85.714

0.457
  comGC/cglC Streptococcus pneumoniae D39

53.333

85.714

0.457
  comYC Streptococcus suis isolate S10

55

76.19

0.419

Multiple sequence alignment