Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   HMPREF9318_RS08500 Genome accession   NZ_KB373319
Coordinates   127427..127822 (+) Length   131 a.a.
NCBI ID   WP_006740714.1    Uniprot ID   -
Organism   Streptococcus urinalis FB127-CNA-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 122427..132822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9318_RS08470 (HMPREF9318_01696) - 123480..124142 (+) 663 WP_006739173.1 CPBP family intramembrane glutamic endopeptidase -
  HMPREF9318_RS08475 (HMPREF9318_01697) proC 124175..124945 (-) 771 WP_006739347.1 pyrroline-5-carboxylate reductase -
  HMPREF9318_RS08480 (HMPREF9318_01698) pepA 124947..126014 (-) 1068 WP_006740084.1 glutamyl aminopeptidase -
  HMPREF9318_RS08485 (HMPREF9318_01699) - 126137..126412 (+) 276 WP_162097623.1 DUF4651 domain-containing protein -
  HMPREF9318_RS08490 (HMPREF9318_01700) - 126412..126726 (+) 315 WP_006739683.1 thioredoxin family protein -
  HMPREF9318_RS08495 (HMPREF9318_01701) ytpR 126740..127363 (+) 624 WP_006740231.1 YtpR family tRNA-binding protein -
  HMPREF9318_RS08500 (HMPREF9318_01702) ssbB/cilA 127427..127822 (+) 396 WP_006740714.1 single-stranded DNA-binding protein Machinery gene
  HMPREF9318_RS08505 (HMPREF9318_01703) - 128234..129196 (+) 963 WP_006740141.1 ABC transporter substrate-binding protein -
  HMPREF9318_RS08510 (HMPREF9318_01704) - 129219..130193 (+) 975 WP_006739500.1 ABC transporter substrate-binding protein -
  HMPREF9318_RS08515 (HMPREF9318_01705) - 130205..131089 (+) 885 WP_006739537.1 ABC transporter permease -
  HMPREF9318_RS08520 (HMPREF9318_01706) - 131099..131902 (+) 804 WP_006739120.1 ABC transporter ATP-binding protein -
  HMPREF9318_RS08525 (HMPREF9318_01707) - 131935..132579 (-) 645 WP_006738639.1 deoxynucleoside kinase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15118.23 Da        Isoelectric Point: 7.7417

>NTDB_id=1113394 HMPREF9318_RS08500 WP_006740714.1 127427..127822(+) (ssbB/cilA) [Streptococcus urinalis FB127-CNA-2]
MYNKVILIGRLTAQPELIKTTNDKSFCRATIAVNRRYKTKTGEKETDFINLVVWGKLAETLVSYANKGSLLSCDGELRTR
KYEKENQTHYISEVLCHSFQLLESRTQRAMRENNNISDLADLVLDDQELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1113394 HMPREF9318_RS08500 WP_006740714.1 127427..127822(+) (ssbB/cilA) [Streptococcus urinalis FB127-CNA-2]
ATGTATAACAAAGTCATATTAATTGGACGACTAACAGCTCAACCTGAGCTAATTAAAACGACAAATGACAAATCATTTTG
TCGTGCGACAATTGCAGTCAATAGAAGATATAAAACAAAAACTGGTGAAAAAGAGACTGATTTTATCAATCTTGTTGTTT
GGGGTAAGTTAGCGGAAACTTTAGTCTCATATGCAAATAAAGGTAGCCTTTTATCATGCGATGGAGAATTAAGGACACGA
AAATATGAAAAAGAAAATCAGACACATTATATTTCAGAAGTCCTTTGCCATTCTTTTCAATTATTAGAATCACGTACTCA
AAGAGCAATGCGTGAAAATAATAATATCAGTGATTTAGCCGATTTGGTTCTTGATGACCAAGAGTTACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus mitis SK321

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae R6

70.992

100

0.71
  ssbB/cilA Streptococcus mitis NCTC 12261

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae Rx1

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae D39

70.992

100

0.71
  ssbA Streptococcus mutans UA159

69.466

100

0.695
  ssbB Streptococcus sobrinus strain NIDR 6715-7

68.702

100

0.687
  ssbB Lactococcus lactis subsp. cremoris KW2

60.714

85.496

0.519
  ssb Latilactobacillus sakei subsp. sakei 23K

41.525

90.076

0.374

Multiple sequence alignment