Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KHN80_RS16565 Genome accession   NZ_HG999365
Coordinates   3837503..3838765 (+) Length   420 a.a.
NCBI ID   WP_026064718.1    Uniprot ID   -
Organism   Xanthomonas arboricola pv. juglandis isolate Xanthomonas arboricola pv. juglandis CPBF 765 isolated from C. illinoinensis     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3833054..3850369 3837503..3838765 within 0


Gene organization within MGE regions


Location: 3833054..3850369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN80_RS16540 (XCY_003304) - 3833060..3833416 (+) 357 WP_211914179.1 hypothetical protein -
  KHN80_RS16545 (XCY_003305) - 3833416..3834153 (+) 738 WP_244860030.1 zeta toxin family protein -
  KHN80_RS16550 (XCY_003306) pilB 3834337..3836064 (-) 1728 WP_211914180.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KHN80_RS16555 (XCY_003307) pilA2 3836211..3836624 (-) 414 WP_211915341.1 pilin Machinery gene
  KHN80_RS16560 (XCY_003308) comP 3836752..3837174 (-) 423 WP_211914181.1 pilin Machinery gene
  KHN80_RS16565 (XCY_003309) pilC 3837503..3838765 (+) 1263 WP_026064718.1 type II secretion system F family protein Machinery gene
  KHN80_RS16570 (XCY_003310) - 3838772..3839635 (+) 864 WP_002812278.1 A24 family peptidase -
  KHN80_RS16575 (XCY_003311) coaE 3839649..3840260 (+) 612 WP_211914182.1 dephospho-CoA kinase -
  KHN80_RS22080 - 3840423..3844781 (+) 4359 WP_244860031.1 RHS repeat-associated core domain-containing protein -
  KHN80_RS16585 (XCY_003313) - 3844784..3845242 (+) 459 WP_211914183.1 hypothetical protein -
  KHN80_RS16590 (XCY_003314) - 3845641..3846042 (+) 402 WP_211914184.1 SymE family type I addiction module toxin -
  KHN80_RS16595 (XCY_003315) - 3846187..3846492 (+) 306 WP_211914185.1 helix-turn-helix transcriptional regulator -
  KHN80_RS16600 (XCY_003316) - 3846500..3847729 (+) 1230 WP_211914186.1 type II toxin-antitoxin system HipA family toxin -
  KHN80_RS16605 (XCY_003317) - 3847863..3849197 (-) 1335 WP_211914187.1 HAMP domain-containing sensor histidine kinase -
  KHN80_RS16610 (XCY_003318) - 3849190..3849867 (-) 678 WP_006448355.1 response regulator transcription factor -
  KHN80_RS16615 (XCY_003319) - 3849899..3850369 (-) 471 WP_244860033.1 hypothetical protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45922.24 Da        Isoelectric Point: 10.2171

>NTDB_id=1112693 KHN80_RS16565 WP_026064718.1 3837503..3838765(+) (pilC) [Xanthomonas arboricola pv. juglandis isolate Xanthomonas arboricola pv. juglandis CPBF 765 isolated from C. illinoinensis]
MSATRSVVKKSQPVERSTSQLLLFIWEGTDKRGIKMKGEQSARNMNLLRAELRRQGITPTVVKPKPKPLFGAAGKKVTAK
DISFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKQLVSQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVL
ETVLDTVATYKENIEALKGKIKKALFYPAMVVAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVAASRFTVSYWW
LMLLIIGGSAAGFIFAYKRSPSMQHGMDRLLLKFPVIGQIMHNSSIARFARTTAVTFKAGVPLVEGLGIVAGATGNKVYE
EAVLRMRDDVSVGYPVNMAMKQVNIFPHMVIQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTI
VGGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=1112693 KHN80_RS16565 WP_026064718.1 3837503..3838765(+) (pilC) [Xanthomonas arboricola pv. juglandis isolate Xanthomonas arboricola pv. juglandis CPBF 765 isolated from C. illinoinensis]
ATGTCAGCTACTCGCAGTGTCGTCAAGAAGTCGCAGCCGGTGGAGAGAAGTACCAGCCAGCTGCTGCTGTTCATTTGGGA
AGGGACGGACAAGCGCGGCATCAAGATGAAAGGTGAACAATCCGCACGTAACATGAATTTGTTGCGCGCAGAACTTCGTC
GACAAGGGATCACTCCTACTGTAGTGAAACCTAAACCCAAGCCACTTTTTGGAGCTGCGGGTAAGAAAGTTACAGCTAAA
GACATATCTTTCTTTAGTCGTCAGATGGCAACGATGATGAAGTCGGGCGTACCTATCGTAAGCTCATTGGAAATAATAGG
CGAGGGACATAAAAACCCCCGCATGAAACAGTTGGTTTCTCAAATACGAACCGATATCGAAGGCGGTTCATCACTCCACG
AAGCCATAAGTAAGCACCCAGTTCAATTTGACGAACTTTACCGAAATCTTGTTCGTGCAGGCGAGGGAGCAGGCGTTCTT
GAGACAGTGCTTGACACAGTCGCAACCTATAAAGAAAATATTGAGGCGTTAAAAGGAAAGATTAAAAAAGCTCTTTTCTA
TCCGGCCATGGTCGTTGCAGTGGCGCTAATCGTCAGCGCAATCTTACTTATCTTTGTTGTGCCCCAGTTTGAAGAGGTGT
TCAAAGGTTTTGGGGCGGAATTACCTGCATTCACCCAAATGATCGTGGCCGCATCGCGCTTTACGGTCAGCTATTGGTGG
CTCATGCTTTTAATTATTGGCGGCTCCGCAGCAGGATTTATCTTTGCTTATAAGCGCTCCCCAAGCATGCAACACGGAAT
GGATCGCCTGCTCTTAAAATTCCCTGTAATCGGCCAAATAATGCATAACAGTTCGATCGCCCGCTTTGCTCGCACGACTG
CTGTTACTTTTAAAGCTGGCGTACCCTTGGTTGAGGGGTTAGGCATAGTGGCGGGCGCGACCGGAAATAAAGTTTATGAG
GAGGCCGTGCTACGCATGCGAGACGACGTATCTGTTGGCTACCCTGTGAACATGGCCATGAAACAGGTTAATATCTTCCC
TCATATGGTAATTCAAATGACAGCAATCGGCGAAGAAGCTGGCGCACTTGATACCATGTTATTCAAAGTGGCAGAGTACT
TCGAACAAGAAGTTAATAACGCCGTGGATGCATTGAGCAGCCTGCTGGAACCATTGATTATGGTGTTCATCGGCACCATC
GTAGGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTGGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.401

94.524

0.505
  pilC Legionella pneumophila strain ERS1305867

51.97

96.667

0.502
  pilC Acinetobacter baylyi ADP1

51.111

96.429

0.493
  pilC Acinetobacter baumannii D1279779

51.637

94.524

0.488
  pilG Neisseria gonorrhoeae MS11

44.888

95.476

0.429
  pilG Neisseria meningitidis 44/76-A

44.389

95.476

0.424
  pilC Vibrio cholerae strain A1552

42.317

94.524

0.4
  pilC Vibrio campbellii strain DS40M4

40.299

95.714

0.386

Multiple sequence alignment