Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | KHN80_RS16560 | Genome accession | NZ_HG999365 |
| Coordinates | 3836752..3837174 (-) | Length | 140 a.a. |
| NCBI ID | WP_211914181.1 | Uniprot ID | - |
| Organism | Xanthomonas arboricola pv. juglandis isolate Xanthomonas arboricola pv. juglandis CPBF 765 isolated from C. illinoinensis | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 3833054..3850369 | 3836752..3837174 | within | 0 |
Gene organization within MGE regions
Location: 3833054..3850369
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHN80_RS16540 (XCY_003304) | - | 3833060..3833416 (+) | 357 | WP_211914179.1 | hypothetical protein | - |
| KHN80_RS16545 (XCY_003305) | - | 3833416..3834153 (+) | 738 | WP_244860030.1 | zeta toxin family protein | - |
| KHN80_RS16550 (XCY_003306) | pilB | 3834337..3836064 (-) | 1728 | WP_211914180.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| KHN80_RS16555 (XCY_003307) | pilA2 | 3836211..3836624 (-) | 414 | WP_211915341.1 | pilin | Machinery gene |
| KHN80_RS16560 (XCY_003308) | comP | 3836752..3837174 (-) | 423 | WP_211914181.1 | pilin | Machinery gene |
| KHN80_RS16565 (XCY_003309) | pilC | 3837503..3838765 (+) | 1263 | WP_026064718.1 | type II secretion system F family protein | Machinery gene |
| KHN80_RS16570 (XCY_003310) | - | 3838772..3839635 (+) | 864 | WP_002812278.1 | A24 family peptidase | - |
| KHN80_RS16575 (XCY_003311) | coaE | 3839649..3840260 (+) | 612 | WP_211914182.1 | dephospho-CoA kinase | - |
| KHN80_RS22080 | - | 3840423..3844781 (+) | 4359 | WP_244860031.1 | RHS repeat-associated core domain-containing protein | - |
| KHN80_RS16585 (XCY_003313) | - | 3844784..3845242 (+) | 459 | WP_211914183.1 | hypothetical protein | - |
| KHN80_RS16590 (XCY_003314) | - | 3845641..3846042 (+) | 402 | WP_211914184.1 | SymE family type I addiction module toxin | - |
| KHN80_RS16595 (XCY_003315) | - | 3846187..3846492 (+) | 306 | WP_211914185.1 | helix-turn-helix transcriptional regulator | - |
| KHN80_RS16600 (XCY_003316) | - | 3846500..3847729 (+) | 1230 | WP_211914186.1 | type II toxin-antitoxin system HipA family toxin | - |
| KHN80_RS16605 (XCY_003317) | - | 3847863..3849197 (-) | 1335 | WP_211914187.1 | HAMP domain-containing sensor histidine kinase | - |
| KHN80_RS16610 (XCY_003318) | - | 3849190..3849867 (-) | 678 | WP_006448355.1 | response regulator transcription factor | - |
| KHN80_RS16615 (XCY_003319) | - | 3849899..3850369 (-) | 471 | WP_244860033.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 140 a.a. Molecular weight: 13876.99 Da Isoelectric Point: 8.1053
>NTDB_id=1112692 KHN80_RS16560 WP_211914181.1 3836752..3837174(-) (comP) [Xanthomonas arboricola pv. juglandis isolate Xanthomonas arboricola pv. juglandis CPBF 765 isolated from C. illinoinensis]
MNKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRARVSEAAVLASGAKTTVAENIANNGGTIAAGACLGVDTTAPATT
NVASVTCGANTGAIAVVTTAKAGAVTLTFTPQPAAGIAGTKWTCVATGGKAAYYPAECRS
MNKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRARVSEAAVLASGAKTTVAENIANNGGTIAAGACLGVDTTAPATT
NVASVTCGANTGAIAVVTTAKAGAVTLTFTPQPAAGIAGTKWTCVATGGKAAYYPAECRS
Nucleotide
Download Length: 423 bp
>NTDB_id=1112692 KHN80_RS16560 WP_211914181.1 3836752..3837174(-) (comP) [Xanthomonas arboricola pv. juglandis isolate Xanthomonas arboricola pv. juglandis CPBF 765 isolated from C. illinoinensis]
ATGAACAAGCAACAAGGCTTCACACTTATTGAATTAATGATTGTTGTGGCGATCATTGCCATTCTGGCGGCGATTGCTTT
GCCTGCATATCAAGACTATACAATTCGCGCACGCGTCTCTGAGGCTGCTGTGCTTGCTTCGGGTGCTAAAACTACAGTTG
CTGAGAACATTGCAAACAACGGCGGAACAATAGCTGCCGGCGCATGCCTTGGGGTTGATACTACTGCGCCAGCAACCACG
AATGTCGCTAGCGTTACCTGTGGCGCCAATACCGGTGCAATTGCAGTTGTCACGACCGCTAAGGCCGGTGCAGTTACCTT
GACCTTCACTCCGCAGCCTGCTGCCGGCATTGCTGGTACTAAGTGGACCTGTGTTGCGACTGGCGGTAAGGCAGCCTATT
ATCCGGCTGAATGCCGTAGTTAA
ATGAACAAGCAACAAGGCTTCACACTTATTGAATTAATGATTGTTGTGGCGATCATTGCCATTCTGGCGGCGATTGCTTT
GCCTGCATATCAAGACTATACAATTCGCGCACGCGTCTCTGAGGCTGCTGTGCTTGCTTCGGGTGCTAAAACTACAGTTG
CTGAGAACATTGCAAACAACGGCGGAACAATAGCTGCCGGCGCATGCCTTGGGGTTGATACTACTGCGCCAGCAACCACG
AATGTCGCTAGCGTTACCTGTGGCGCCAATACCGGTGCAATTGCAGTTGTCACGACCGCTAAGGCCGGTGCAGTTACCTT
GACCTTCACTCCGCAGCCTGCTGCCGGCATTGCTGGTACTAAGTGGACCTGTGTTGCGACTGGCGGTAAGGCAGCCTATT
ATCCGGCTGAATGCCGTAGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comP | Acinetobacter baylyi ADP1 |
52.349 |
100 |
0.557 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
45.238 |
100 |
0.543 |
| pilA2 | Legionella pneumophila str. Paris |
54.676 |
99.286 |
0.543 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
53.957 |
99.286 |
0.536 |
| pilA/pilA1 | Eikenella corrodens VA1 |
40.789 |
100 |
0.443 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
41.007 |
99.286 |
0.407 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
36.486 |
100 |
0.386 |