Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KHN93_RS15980 Genome accession   NZ_HG999362
Coordinates   3687472..3688725 (+) Length   417 a.a.
NCBI ID   WP_104600100.1    Uniprot ID   -
Organism   Xanthomonas arboricola pv. juglandis isolate Xanthomonas arboricola pv. juglandis CPBF 1494 isolated from C. illinoinensis     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3682472..3693725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN93_RS15965 (XCY_003192) pilB 3684300..3686036 (-) 1737 WP_104600103.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KHN93_RS21725 (XCY_003194) - 3686666..3687118 (-) 453 WP_104600101.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  KHN93_RS15980 (XCY_003195) pilC 3687472..3688725 (+) 1254 WP_104600100.1 type II secretion system F family protein Machinery gene
  KHN93_RS15985 (XCY_003196) - 3688733..3689596 (+) 864 WP_016849610.1 A24 family peptidase -
  KHN93_RS15990 (XCY_003197) coaE 3689610..3690233 (+) 624 WP_211920724.1 dephospho-CoA kinase -
  KHN93_RS15995 (XCY_003198) - 3690333..3690488 (+) 156 Protein_3141 SymE family type I addiction module toxin -
  KHN93_RS16000 (XCY_003199) - 3690592..3691926 (-) 1335 WP_016904089.1 HAMP domain-containing sensor histidine kinase -
  KHN93_RS16005 (XCY_003200) - 3691919..3692596 (-) 678 WP_006448355.1 response regulator transcription factor -
  KHN93_RS16010 (XCY_003201) - 3692624..3693099 (-) 476 Protein_3144 hypothetical protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45543.73 Da        Isoelectric Point: 10.0346

>NTDB_id=1112639 KHN93_RS15980 WP_104600100.1 3687472..3688725(+) (pilC) [Xanthomonas arboricola pv. juglandis isolate Xanthomonas arboricola pv. juglandis CPBF 1494 isolated from C. illinoinensis]
MAATSGTLKSKPGGKTSQLQVYVWEGSDRRGVKMKGEQSARNVNLLRAELRRQGITPSIVKPKPKPLFGETGKKITPKDI
AFFSRQMATMMKSGVPIVGALEIIGSGHKNPRMRNLVGQVRTDIEGGSSLYEAMSKHPVQFDELYRNLVKAGEGAGVLET
VLDTVATYKENIEALKGKIKKALFYPAMVIAVAIIVSAILLVFVVPQFEDVFKGFGAELPAFTQLIVSASRFMVAYWWLI
LFTSIGCVVAFLYAYKRSLRLQHLIDRLTLKVPVIGQIMHNSSIARFSRTTAVTFKAGVPLVEALGIVAGATGNAVYEDA
VLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPLIMVFIGTIVG
GMVIGMYLPIFKLASVV

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=1112639 KHN93_RS15980 WP_104600100.1 3687472..3688725(+) (pilC) [Xanthomonas arboricola pv. juglandis isolate Xanthomonas arboricola pv. juglandis CPBF 1494 isolated from C. illinoinensis]
ATGGCAGCAACAAGCGGCACTCTCAAAAGCAAGCCGGGCGGCAAGACAAGCCAGCTACAAGTCTATGTGTGGGAAGGCTC
CGATCGTCGTGGCGTCAAGATGAAGGGCGAACAGAGCGCGCGTAACGTCAACCTGCTGCGAGCCGAGTTGCGCCGCCAGG
GGATCACCCCAAGTATAGTCAAACCTAAACCGAAGCCCTTGTTTGGCGAGACTGGCAAAAAAATCACGCCGAAAGACATT
GCCTTCTTTAGTAGACAGATGGCGACAATGATGAAGTCAGGCGTACCTATAGTCGGCGCGCTGGAAATCATAGGAAGCGG
ACACAAGAATCCGCGCATGCGCAATTTGGTGGGTCAAGTTAGAACCGACATCGAAGGCGGCTCATCGCTCTATGAGGCCA
TGAGCAAACACCCGGTTCAGTTTGACGAGCTATATAGAAACCTAGTCAAAGCCGGCGAAGGCGCGGGCGTACTTGAAACG
GTCCTCGATACCGTTGCGACTTACAAAGAAAATATTGAAGCACTCAAAGGAAAAATCAAAAAAGCGCTTTTTTACCCTGC
CATGGTTATTGCAGTAGCCATCATAGTGAGCGCTATTCTACTAGTATTTGTAGTACCCCAATTTGAGGACGTCTTTAAAG
GGTTTGGCGCTGAACTACCTGCATTTACTCAGCTAATAGTATCCGCATCGCGCTTTATGGTCGCTTATTGGTGGCTAATA
CTCTTCACGAGCATAGGGTGCGTCGTAGCATTTTTATACGCTTACAAGCGCTCACTTCGCCTACAACACCTGATAGATAG
GCTCACTCTCAAAGTGCCCGTCATAGGGCAAATAATGCACAACAGCTCAATTGCACGATTCTCAAGAACGACGGCGGTGA
CCTTTAAGGCCGGCGTTCCGCTAGTGGAGGCTCTCGGCATTGTCGCCGGAGCTACTGGCAATGCCGTTTATGAGGACGCC
GTTCTGCGTATGCGGGACGATGTTTCAGTGGGTTATCCGGTCAATATGGCCATGAAACAGGTAAATTTATTTCCGCACAT
GGTCATCCAAATGACAGCGATCGGCGAAGAAGCGGGCGCGCTAGACGCCATGCTCTTCAAAGTGGCCGAGTATTACGAGC
AAGAAGTCAATAATGCCGTGGATGCCTTGAGCAGTTTACTTGAGCCTCTGATTATGGTCTTTATTGGAACAATCGTTGGC
GGAATGGTTATCGGCATGTATCTACCAATCTTCAAACTCGCCTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

53.218

96.882

0.516
  pilC Pseudomonas stutzeri DSM 10701

54.156

95.204

0.516
  pilC Legionella pneumophila strain ERS1305867

53.634

95.683

0.513
  pilC Acinetobacter baumannii D1279779

51.485

96.882

0.499
  pilG Neisseria gonorrhoeae MS11

43.467

95.444

0.415
  pilG Neisseria meningitidis 44/76-A

43.216

95.444

0.412
  pilC Vibrio cholerae strain A1552

41.687

96.643

0.403
  pilC Vibrio campbellii strain DS40M4

40.25

95.923

0.386
  pilC Thermus thermophilus HB27

39.348

95.683

0.376

Multiple sequence alignment