Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   NCDO2118_RS00355 Genome accession   NZ_CP009054
Coordinates   69040..70299 (-) Length   419 a.a.
NCBI ID   WP_012896944.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis NCDO 2118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 64040..75299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCDO2118_RS00330 (NCDO2118_0060) - 64980..65570 (+) 591 WP_003132255.1 flavin reductase family protein -
  NCDO2118_RS00335 (NCDO2118_0061) rpmG 65649..65798 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  NCDO2118_RS00340 (NCDO2118_0062) rpmF 65828..66001 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  NCDO2118_RS00345 (NCDO2118_0063) - 66365..68146 (+) 1782 WP_012896942.1 heavy metal translocating P-type ATPase -
  NCDO2118_RS00350 (NCDO2118_0064) spo0J 68199..68984 (-) 786 WP_023189497.1 ParB/RepB/Spo0J family partition protein Regulator
  NCDO2118_RS00355 (NCDO2118_0065) rarA 69040..70299 (-) 1260 WP_012896944.1 replication-associated recombination protein A Machinery gene
  NCDO2118_RS00360 (NCDO2118_0066) - 70343..70831 (-) 489 WP_012896945.1 GNAT family N-acetyltransferase -
  NCDO2118_RS00365 (NCDO2118_0067) - 70983..71450 (+) 468 WP_010905112.1 DUF3013 family protein -
  NCDO2118_RS00370 (NCDO2118_0068) - 71480..73033 (+) 1554 WP_012896946.1 ABC-F family ATP-binding cassette domain-containing protein -
  NCDO2118_RS00375 - 73213..73443 (+) 231 WP_235187824.1 hypothetical protein -
  NCDO2118_RS00380 (NCDO2118_0069) - 73481..73969 (+) 489 WP_010905115.1 YdeI/OmpD-associated family protein -
  NCDO2118_RS00385 (NCDO2118_0070) prmA 73983..74936 (+) 954 WP_012896947.1 50S ribosomal protein L11 methyltransferase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46753.08 Da        Isoelectric Point: 5.7588

>NTDB_id=111256 NCDO2118_RS00355 WP_012896944.1 69040..70299(-) (rarA) [Lactococcus lactis subsp. lactis NCDO 2118]
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVN
LSLQDKERGFDFDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVSALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGK
YEKALHSRKEWIDEQKKRS

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=111256 NCDO2118_RS00355 WP_012896944.1 69040..70299(-) (rarA) [Lactococcus lactis subsp. lactis NCDO 2118]
ATGGCACAAAATCTTGCAAGACGAATGAGACCAAGAAATATTGATGAAATTGTTGGACAAAAACATTTAGTTGGTAAAGG
AAAAATCATTCGCCGAATGGTCGAAACTCAACTTCTTTCAAGTATGATTCTCTACGGACCTCCTGGCATTGGTAAAACTT
CAATTGCTTCAGCGATTGCTGGAACAATGAATGTCGCATTTCGGACATTTAATGCAACGACAGACACTAAAAAAAGACTT
CAAGAAATTGCCTCAGAAGCCGAATTTTCTGGTCAGCTTGTTTTATTACTTGATGAAATTCATCGCCTAGACAAACCTAA
ACAAGATTTTCTTTTACCACTTTTAGAAAATGGACAAATTATTTTAATTGGAGCAACAACCGAAAACCCTTATTTTTCAG
TTGTTCCAGCGATTCGTTCTCGCGTACAGATTTTTGAATTAAAACCTTTAGAACCAGAAGATTTAGAATTTGCTGTAAAC
CTAAGTTTACAAGATAAAGAACGTGGATTTGATTTTGATGTGACCATTGACGATGATGCACTTTACTTTTTAATTCATTC
AACCAATGGGGATTTACGTTCTACTTTTAATGCCTTAGAATTAGCCGTTCTTTCCTCAGAAGAACACCATGTCACTTTAG
ATGATATGGAAAATTCTTTGCAAAGAAAAGCTGCAACTTTTGATAAAGATGGCGATGCTCATTATGACTTGCTTTCTGCT
TTACAAAAGTCAATTCGTGGTTCTGATGTCAACGCAAGTTTACACTATGCGGCTCGTTTAATTGAGGGCGGAGATTTGCA
AAGTCTAGCCCGGCGCTTAACCGTTATGGCTTATGAAGATATTGGTTTAGCAAATCCTGATGCCGCACTTCATACGGTTT
CAGCATTATCAGCGGCCGAAAAACTCGGTTTTCCTGAGGCACGGATTCCCCTTGCCAATATAATTATTGACTTGGCTTTA
TCCCCTAAATCAAACGCGGCTTATTTGGCGATGGATGAAGCGATTGCTGATTTAGGGAAATATGGAAATCTTGCTGTACC
ACCACACTTACAGGATGGCCATTACGCTGGGGCAAAAGATTTAGGAAGGTCTGTAGAATACCAATATGCTCATAATTTTC
CTAATCACTGGGTAAACCAACAGTACTTACCTGATAAAATTAAAAATGCTGATTATTTCCGTCCTGATGATATGGGAAAA
TATGAAAAAGCACTCCACAGTCGTAAAGAATGGATTGATGAACAAAAAAAGAGGAGCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-145)

AAA C-terminal domain (AAA_assoc_2)

(173-246)

MgsA AAA+ ATPase C terminal (MgsA_C)

(247-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.716

100

0.601

Multiple sequence alignment