Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMCNI_RS08440 Genome accession   NZ_AP038791
Coordinates   1818584..1819804 (-) Length   406 a.a.
NCBI ID   WP_226691635.1    Uniprot ID   -
Organism   Rodentibacter sp. THUN1657     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1813584..1824804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCNI_RS08410 (THUN1657_16150) - 1814385..1814915 (-) 531 WP_005695476.1 inorganic diphosphatase -
  ACMCNI_RS08415 (THUN1657_16160) - 1815190..1816506 (+) 1317 WP_412763598.1 NCS2 family permease -
  ACMCNI_RS08420 (THUN1657_16170) - 1816789..1817070 (-) 282 WP_412763599.1 GNAT family N-acetyltransferase -
  ACMCNI_RS08425 (THUN1657_16180) yacG 1817067..1817273 (-) 207 WP_226691637.1 DNA gyrase inhibitor YacG -
  ACMCNI_RS08430 (THUN1657_16190) coaE 1817266..1817886 (-) 621 WP_226692923.1 dephospho-CoA kinase -
  ACMCNI_RS08435 (THUN1657_16200) pilD 1817886..1818587 (-) 702 WP_226691636.1 prepilin peptidase Machinery gene
  ACMCNI_RS08440 (THUN1657_16210) pilC 1818584..1819804 (-) 1221 WP_226691635.1 type II secretion system F family protein Machinery gene
  ACMCNI_RS08445 (THUN1657_16220) pilB 1819806..1821185 (-) 1380 WP_226691634.1 GspE/PulE family protein Machinery gene
  ACMCNI_RS08450 (THUN1657_16230) pilA 1821182..1821619 (-) 438 WP_226691633.1 prepilin peptidase-dependent pilin Machinery gene
  ACMCNI_RS08455 (THUN1657_16240) ampD 1821735..1822298 (+) 564 WP_226691632.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACMCNI_RS08460 (THUN1657_16250) rppH 1822815..1823399 (+) 585 WP_226691631.1 RNA pyrophosphohydrolase -
  ACMCNI_RS08465 (THUN1657_16260) lgt 1823531..1824331 (+) 801 WP_374707287.1 prolipoprotein diacylglyceryl transferase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 46163.36 Da        Isoelectric Point: 9.8391

>NTDB_id=111255 ACMCNI_RS08440 WP_226691635.1 1818584..1819804(-) (pilC) [Rodentibacter sp. THUN1657]
MAKKCFHYQAQNALKQIQKGVIIADSHQQAQFQLMNRGLTNIKLQQNWQLNTKPKNTEISTVLNQLATLLQAAIPLKNSL
QILQQNCTQIALNTWLEQLLRSIESGYSFSQSIEQQGKYLTQQEIQLIQVGEMTGKLAIVCNKIAAHRCQSLALQRKLQK
IMLYPSMVLGISLLLTISLLIFIVPQFAEMYQSNNADLPVLTNVLLVMSNFLKNDIGKLALTLLIFWLLYYFKLKHSPMF
QQQKTRIIRATPIFGNIQQLSRLVNFSQSLYIMLQAGIPLNQALNSFLPHTQSWQTKKSIVSDQILDTEVRSILQWVSQG
YSFSDSVSSNLFPMEAQQMLQIGEKSGKLALMLQHIAENYQEKLNHQIDLLSQMLEPLMMVVIGSLIGIIMMGMYLPIFN
MGSVVQ

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=111255 ACMCNI_RS08440 WP_226691635.1 1818584..1819804(-) (pilC) [Rodentibacter sp. THUN1657]
ATGGCAAAAAAATGCTTTCATTACCAAGCACAAAACGCCTTAAAACAAATACAAAAAGGCGTGATTATCGCCGATTCTCA
TCAACAAGCCCAATTCCAATTAATGAATCGGGGACTTACCAATATCAAACTGCAACAAAATTGGCAACTCAATACTAAGC
CAAAAAATACCGAAATCAGTACGGTATTGAACCAACTTGCAACCTTGCTACAAGCCGCGATTCCACTCAAAAACAGTTTA
CAAATCTTACAACAAAACTGTACTCAGATTGCCCTAAACACTTGGCTTGAACAACTTTTGAGAAGCATTGAATCCGGCTA
TTCTTTTTCTCAAAGTATCGAGCAACAGGGAAAATATCTTACACAGCAAGAAATTCAGCTAATTCAAGTGGGTGAAATGA
CAGGTAAATTAGCCATTGTTTGTAACAAAATTGCGGCACATCGCTGCCAATCTTTAGCACTACAACGTAAATTACAGAAA
ATTATGCTTTATCCCTCAATGGTATTAGGTATTTCTCTCTTGCTCACTATTTCCTTACTAATTTTTATCGTGCCGCAATT
TGCCGAAATGTATCAGAGCAACAATGCGGATTTGCCCGTATTAACGAATGTATTACTTGTGATGTCTAATTTTCTTAAAA
ATGATATAGGAAAGTTAGCCTTAACGCTCCTCATATTTTGGTTGCTTTATTATTTCAAACTGAAACATTCTCCCATGTTT
CAACAACAAAAAACACGAATTATTAGGGCAACACCTATTTTCGGCAATATCCAACAACTTTCCCGTTTAGTGAATTTCAG
CCAAAGTCTGTACATTATGTTGCAAGCGGGAATCCCTCTCAACCAAGCCTTAAATAGTTTTTTACCGCACACACAAAGTT
GGCAAACGAAAAAAAGCATAGTGAGTGATCAAATTCTCGATACTGAAGTGCGGTCAATTTTACAATGGGTTTCACAGGGT
TATTCATTTTCAGATAGCGTAAGCAGTAATCTATTCCCGATGGAAGCACAGCAAATGCTACAAATTGGTGAGAAAAGCGG
AAAACTTGCTTTAATGTTGCAACATATTGCAGAAAACTATCAAGAAAAGCTTAATCATCAAATTGATTTATTATCACAAA
TGCTGGAACCACTAATGATGGTCGTTATCGGAAGCCTAATCGGTATCATTATGATGGGTATGTATTTACCGATTTTTAAT
ATGGGATCGGTGGTGCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(266-397)

Type II secretion system (T2SS), protein F (T2SSF)

(63-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

78.818

100

0.788
  pilC Haemophilus influenzae 86-028NP

78.079

100

0.781
  pilC Glaesserella parasuis strain SC1401

38.404

98.768

0.379

Multiple sequence alignment