Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | KHO06_RS13000 | Genome accession | NZ_HG992751 |
| Coordinates | 2817438..2817725 (-) | Length | 95 a.a. |
| NCBI ID | WP_005425566.1 | Uniprot ID | A0A812FIP9 |
| Organism | Vibrio sp. B1FIG11 isolate LMG10946-nano | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2812438..2822725
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHO06_RS12975 (ACOMICROBIO_LOCUS1734) | - | 2812879..2814093 (+) | 1215 | WP_029788618.1 | pyridoxal phosphate-dependent aminotransferase | - |
| KHO06_RS12980 (ACOMICROBIO_LMKGKHOH_03191) | yfbR | 2814178..2814762 (+) | 585 | WP_005425568.1 | 5'-deoxynucleotidase | - |
| KHO06_RS12985 (ACOMICROBIO_LOCUS1735) | - | 2814766..2816100 (+) | 1335 | WP_045455046.1 | anti-phage deoxyguanosine triphosphatase | - |
| KHO06_RS12990 (ACOMICROBIO_LMKGKHOH_03193) | - | 2816121..2816738 (-) | 618 | WP_212581715.1 | DTW domain-containing protein | - |
| KHO06_RS12995 (ACOMICROBIO_LMKGKHOH_03194) | rrtA | 2816742..2817293 (+) | 552 | WP_212581716.1 | rhombosortase | - |
| KHO06_RS13000 (ACOMICROBIO_LOCUS1736) | comEA | 2817438..2817725 (-) | 288 | WP_005425566.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| KHO06_RS13005 (ACOMICROBIO_LOCUS1737) | ppiD | 2817871..2819730 (-) | 1860 | WP_212581717.1 | peptidylprolyl isomerase | - |
| KHO06_RS13010 (ACOMICROBIO_LOCUS1738) | - | 2819945..2820217 (-) | 273 | WP_005430934.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 95 a.a. Molecular weight: 10534.24 Da Isoelectric Point: 5.8692
>NTDB_id=1112482 KHO06_RS13000 WP_005425566.1 2817438..2817725(-) (comEA) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
MKWMLTLCLLILAPMSWAETKTKADKYEGIEITVNVNSATAEEIATLLNGIGEKKAQDIVEYRNEHGPFKTAADLTKVKG
IGEATVKKNEDRILL
MKWMLTLCLLILAPMSWAETKTKADKYEGIEITVNVNSATAEEIATLLNGIGEKKAQDIVEYRNEHGPFKTAADLTKVKG
IGEATVKKNEDRILL
Nucleotide
Download Length: 288 bp
>NTDB_id=1112482 KHO06_RS13000 WP_005425566.1 2817438..2817725(-) (comEA) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
ATGAAATGGATGTTAACGCTGTGCTTATTGATACTCGCGCCGATGAGCTGGGCGGAAACAAAGACTAAAGCAGATAAGTA
TGAAGGTATTGAGATTACGGTTAACGTTAACTCTGCCACTGCAGAAGAGATTGCGACGCTACTTAATGGTATTGGTGAGA
AGAAAGCGCAAGATATTGTTGAGTATCGCAACGAGCACGGTCCATTTAAAACAGCTGCGGATCTTACAAAGGTGAAAGGC
ATCGGTGAGGCGACTGTTAAGAAGAACGAAGACCGCATCCTGCTGTAA
ATGAAATGGATGTTAACGCTGTGCTTATTGATACTCGCGCCGATGAGCTGGGCGGAAACAAAGACTAAAGCAGATAAGTA
TGAAGGTATTGAGATTACGGTTAACGTTAACTCTGCCACTGCAGAAGAGATTGCGACGCTACTTAATGGTATTGGTGAGA
AGAAAGCGCAAGATATTGTTGAGTATCGCAACGAGCACGGTCCATTTAAAACAGCTGCGGATCTTACAAAGGTGAAAGGC
ATCGGTGAGGCGACTGTTAAGAAGAACGAAGACCGCATCCTGCTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
96.842 |
100 |
0.968 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
80 |
100 |
0.8 |
| comEA | Vibrio cholerae C6706 |
58.333 |
100 |
0.589 |
| comEA | Vibrio cholerae strain A1552 |
58.333 |
100 |
0.589 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
39.286 |
100 |
0.463 |
| comE | Neisseria gonorrhoeae MS11 |
39.785 |
97.895 |
0.389 |
| comE | Neisseria gonorrhoeae MS11 |
39.785 |
97.895 |
0.389 |
| comE | Neisseria gonorrhoeae MS11 |
39.785 |
97.895 |
0.389 |
| comE | Neisseria gonorrhoeae MS11 |
39.785 |
97.895 |
0.389 |
| comEA | Acinetobacter baylyi ADP1 |
48.649 |
77.895 |
0.379 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
56.452 |
65.263 |
0.368 |