Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KHN79_RS13930 Genome accession   NZ_HG992749
Coordinates   3039649..3040758 (-) Length   369 a.a.
NCBI ID   WP_182011313.1    Uniprot ID   -
Organism   Vibrio sp. B1FLJ16     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3034649..3045758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN79_RS13900 (ACOMICROBIO_LOCUS2003) hemF 3035097..3036014 (-) 918 WP_182011318.1 oxygen-dependent coproporphyrinogen oxidase -
  KHN79_RS13905 (ACOMICROBIO_LOCUS2004) - 3036062..3036619 (-) 558 WP_182011317.1 L-threonylcarbamoyladenylate synthase -
  KHN79_RS13910 (ACOMICROBIO_LOCUS2005) purE 3036821..3037306 (+) 486 WP_140381076.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  KHN79_RS13915 (ACOMICROBIO_LOCUS2006) - 3037311..3038444 (+) 1134 WP_182011316.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  KHN79_RS13920 (ACOMICROBIO_LOCUS2007) - 3038519..3039088 (-) 570 WP_182011315.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  KHN79_RS13925 (ACOMICROBIO_FLGHMIGD_02819) - 3039167..3039646 (-) 480 WP_182011314.1 DUF494 family protein -
  KHN79_RS13930 (ACOMICROBIO_LOCUS2008) dprA 3039649..3040758 (-) 1110 WP_182011313.1 DNA-processing protein DprA Machinery gene
  KHN79_RS13935 (ACOMICROBIO_LOCUS2009) - 3040742..3041833 (-) 1092 WP_182011312.1 LysM peptidoglycan-binding domain-containing protein -
  KHN79_RS13940 (ACOMICROBIO_LOCUS2010) def 3041971..3042489 (+) 519 WP_211907253.1 peptide deformylase -
  KHN79_RS13945 (ACOMICROBIO_LOCUS2011) fmt 3042523..3043470 (+) 948 WP_182011311.1 methionyl-tRNA formyltransferase -
  KHN79_RS13950 (ACOMICROBIO_LOCUS2012) rsmB 3043817..3045100 (+) 1284 WP_182011310.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39868.46 Da        Isoelectric Point: 6.5861

>NTDB_id=1112455 KHN79_RS13930 WP_182011313.1 3039649..3040758(-) (dprA) [Vibrio sp. B1FLJ16]
MTRPNENDLIAWLKLSCLPGIGGVRMNQLLSKDTPRNIVNSSPEYLQRLGLSPKQLQAWSSVDKEVDACLAWKARSANHH
ILTLDDPFYPPLLRQIVTPPPLLFVQGESTCLSQPQIAMVGSRNASVDGLQHARYFAADFARNDLVVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLAQIYPARHRGLAQRAAENGALVSEFRPDAKPRAEHFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQGREVFALPTSINAANASGGNHLIRNGACLVEKTKDVLDEIQSLLDWSVNQTFDLFSALNEEEELPFPQLLA
NVGSEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=1112455 KHN79_RS13930 WP_182011313.1 3039649..3040758(-) (dprA) [Vibrio sp. B1FLJ16]
ATGACTCGTCCCAATGAAAATGACCTTATTGCCTGGCTAAAGCTGAGTTGCTTACCAGGCATTGGCGGGGTCAGAATGAA
TCAGCTTCTGAGCAAAGATACCCCGCGTAATATTGTTAATTCTTCCCCTGAGTACCTACAACGACTTGGCTTGAGCCCGA
AGCAACTTCAAGCTTGGTCATCGGTCGATAAAGAAGTTGATGCTTGCCTGGCCTGGAAAGCACGCTCTGCAAATCATCAT
ATCCTGACCTTAGACGATCCCTTTTACCCTCCGTTACTCAGGCAGATTGTTACTCCTCCTCCATTACTGTTTGTTCAAGG
AGAGTCTACCTGTTTATCTCAGCCCCAGATTGCCATGGTGGGAAGCCGTAATGCCAGTGTTGACGGATTGCAGCATGCCC
GTTATTTTGCTGCCGACTTTGCTCGCAACGATCTTGTCGTCACCAGTGGGTTAGCTCTGGGCATAGATGGCCACGCTCAT
GACGGAGCCCTGCAGGCTGGTGGTAAGACGATAGCCGTACTCGGCTCTGGCCTAGCACAAATTTATCCGGCCCGGCATCG
CGGACTCGCTCAACGGGCTGCAGAAAACGGTGCGCTTGTTTCTGAGTTTCGCCCCGATGCCAAGCCGAGGGCAGAACACT
TTCCGCGTCGGAATCGAATCATTAGCGGGTTATCGCTCGGGGTTTTAGTGGTAGAAGCTGCAGAGAAAAGTGGCTCGCTG
ATCACCGCACGCTACGCCCTTGAGCAAGGAAGAGAAGTGTTTGCTCTGCCTACCTCTATCAATGCGGCTAATGCCAGTGG
TGGCAATCATTTGATTCGTAATGGTGCCTGTCTCGTAGAAAAGACCAAAGACGTGCTCGATGAAATACAGTCGTTGCTCG
ACTGGTCTGTTAATCAGACTTTTGATTTATTTTCTGCGTTAAATGAAGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAGGAAGTCATGATGCAGCT
CTTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(316-362)

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.74

100

0.837
  dprA Vibrio cholerae strain A1552

58.108

100

0.583
  dprA Glaesserella parasuis strain SC1401

46.361

100

0.466
  dprA Legionella pneumophila strain ERS1305867

48.287

86.992

0.42
  dprA Haemophilus influenzae Rd KW20

44.807

91.328

0.409
  dprA Neisseria meningitidis strain C311

36.364

100

0.39
  dprA Neisseria meningitidis MC58

36.364

100

0.39
  dprA Neisseria gonorrhoeae MS11

36.294

100

0.388
  dprA Neisseria gonorrhoeae strain FA1090

36.041

100

0.385
  dprA Acinetobacter baylyi ADP1

39.701

90.786

0.36

Multiple sequence alignment