Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   P3C48_RS16630 Genome accession   NZ_HG992341
Coordinates   3885748..3887004 (+) Length   418 a.a.
NCBI ID   WP_275548358.1    Uniprot ID   A0A8D6YEI5
Organism   Xanthomonas arboricola pv. corylina strain CFBP 1159     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3880748..3892004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3C48_RS16610 (CFBP1159_32860) pilR 3881026..3882420 (+) 1395 WP_047127086.1 sigma-54 dependent transcriptional regulator Regulator
  P3C48_RS16615 (CFBP1159_32880) pilB 3882634..3884379 (-) 1746 WP_275548467.1 type IV-A pilus assembly ATPase PilB Machinery gene
  P3C48_RS16620 - 3884411..3884815 (-) 405 WP_275548562.1 pilin -
  P3C48_RS16625 - 3884961..3885401 (-) 441 WP_104613411.1 pilin -
  P3C48_RS16630 (CFBP1159_32890) pilC 3885748..3887004 (+) 1257 WP_275548358.1 type II secretion system F family protein Machinery gene
  P3C48_RS16635 (CFBP1159_32900) - 3887011..3887874 (+) 864 WP_275548357.1 A24 family peptidase -
  P3C48_RS16640 (CFBP1159_32910) coaE 3887888..3888511 (+) 624 WP_275548563.1 dephospho-CoA kinase -
  P3C48_RS16645 (CFBP1159_32920) - 3888611..3888766 (+) 156 Protein_3260 SymE family type I addiction module toxin -
  P3C48_RS16650 (CFBP1159_32930) - 3888872..3890206 (-) 1335 WP_275548354.1 HAMP domain-containing sensor histidine kinase -
  P3C48_RS16655 (CFBP1159_32940) - 3890199..3890876 (-) 678 WP_006448355.1 response regulator transcription factor -
  P3C48_RS16660 (CFBP1159_32950) - 3890977..3891336 (-) 360 WP_275548353.1 hypothetical protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45821.22 Da        Isoelectric Point: 10.2556

>NTDB_id=1112350 P3C48_RS16630 WP_275548358.1 3885748..3887004(+) (pilC) [Xanthomonas arboricola pv. corylina strain CFBP 1159]
MSVARNVIKKPVDRSTSQLQPFIWEGTDKRGVKMKGEQTARNVNMLRAELRRQGITPNVVKPKPKPLFGAAGKKVTPKDI
SFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKQMVGQIRTDIEGGSSLHESISRHPVQFDELYRNLVRAGEGAGVLET
VLDTVATYKENIEALKGKIKKALFYPAMVVVVALVVSAILLVFVVPQFEEVFKGFGAELPAFTQMIVAASRFMVSYWWAL
LVIVAGAVIGFIYAYKRSPRMQHGMDRIILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEEA
VLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIVG
GMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1112350 P3C48_RS16630 WP_275548358.1 3885748..3887004(+) (pilC) [Xanthomonas arboricola pv. corylina strain CFBP 1159]
ATGTCCGTCGCTCGCAACGTCATCAAAAAACCAGTCGATCGAAGCACAAGCCAGCTGCAGCCGTTTATCTGGGAAGGAAC
GGACAAGCGCGGCGTCAAGATGAAGGGAGAGCAAACAGCGCGCAACGTAAACATGTTGCGCGCCGAACTTCGGCGCCAGG
GTATTACACCAAACGTCGTTAAGCCCAAGCCAAAGCCACTGTTTGGCGCGGCAGGCAAAAAAGTGACTCCTAAGGACATC
TCGTTCTTTAGCCGCCAAATGGCAACCATGATGAAATCCGGCGTACCTATTGTTGGTTCACTGGAAATTATTGGGGAGGG
TCACAAAAACCCACGGATGAAGCAAATGGTTGGTCAGATAAGAACCGATATCGAGGGAGGCTCGTCCCTACATGAATCCA
TTAGCAGACACCCAGTTCAATTTGACGAGCTCTACCGAAACCTAGTCCGCGCAGGTGAAGGCGCGGGCGTGCTAGAAACC
GTACTCGACACAGTTGCAACTTACAAAGAAAATATTGAGGCATTGAAGGGCAAGATCAAGAAAGCTCTTTTCTACCCTGC
GATGGTCGTCGTAGTTGCTCTCGTGGTTAGCGCAATCCTGCTAGTTTTCGTAGTTCCACAGTTCGAAGAGGTTTTCAAGG
GCTTTGGTGCGGAATTACCTGCTTTCACACAAATGATCGTAGCCGCATCGCGCTTTATGGTTAGCTACTGGTGGGCTCTC
TTGGTCATCGTAGCGGGCGCAGTCATTGGTTTCATTTATGCCTACAAGCGCTCGCCACGCATGCAGCACGGCATGGATCG
GATTATCTTAAAGGTACCTGTCATAGGCCAAATCATGCACAACAGCGCGATCGCTCGCTTCGCCCGCACAACTGCCGTTA
CCTTTAAAGCCGGTGTTCCGTTAGTGGAAGCGCTAGGGATTGTGGCTGGCGCCACAGGCAATAAAGTCTACGAAGAAGCC
GTGCTTCGCATGCGAGACGATGTGTCGGTGGGCTACCCGGTCAACATGGCCATGAAACAGGTCAATTTATTCCCGCACAT
GGTGATCCAAATGACTGCCATTGGCGAGGAAGCAGGTGCGCTTGACACTATGCTGTTCAAGGTTGCCGAGTACTTCGAAC
AGGAGGTCAACAATGCTGTGGATGCGCTCAGCAGTTTGTTGGAGCCAATGATCATGGTGTTCATTGGCACCATCGTAGGC
GGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.202

97.129

0.517
  pilC Pseudomonas stutzeri DSM 10701

52.778

94.737

0.5
  pilC Acinetobacter baylyi ADP1

51.117

96.411

0.493
  pilC Acinetobacter baumannii D1279779

50.372

96.411

0.486
  pilG Neisseria gonorrhoeae MS11

43.86

95.455

0.419
  pilG Neisseria meningitidis 44/76-A

43.358

95.455

0.414
  pilC Vibrio cholerae strain A1552

41.25

95.694

0.395
  pilC Vibrio campbellii strain DS40M4

40.447

96.411

0.39

Multiple sequence alignment