Detailed information NTG1112348

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: P3C48_RS16610
• Genome accession: NZ_HG992341
• Coordinates: 3881026..3882420 (+)
• Length: 464 a.a.
• NCBI ID: WP_047127086.1
• Uniprot ID: A0A7U7HJH5
• Organism: Xanthomonas arboricola pv. corylina strain CFBP 1159
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3876026..3887420

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P3C48_RS16595 (CFBP1159_32830)	sucD	3876919..3877794 (-)	876	WP_011038208.1	succinate--CoA ligase subunit alpha	-
P3C48_RS16600 (CFBP1159_32840)	sucC	3877819..3878988 (-)	1170	WP_016901264.1	ADP-forming succinate--CoA ligase subunit beta	-
P3C48_RS16605 (CFBP1159_32850)	-	3879220..3880833 (+)	1614	WP_016901263.1	HAMP domain-containing sensor histidine kinase	-
P3C48_RS16610 (CFBP1159_32860)	pilR	3881026..3882420 (+)	1395	WP_047127086.1	sigma-54 dependent transcriptional regulator	Regulator
P3C48_RS16615 (CFBP1159_32880)	pilB	3882634..3884379 (-)	1746	WP_275548467.1	type IV-A pilus assembly ATPase PilB	Machinery gene
P3C48_RS16620	-	3884411..3884815 (-)	405	WP_275548562.1	pilin	-
P3C48_RS16625	-	3884961..3885401 (-)	441	WP_104613411.1	pilin	-
P3C48_RS16630 (CFBP1159_32890)	pilC	3885748..3887004 (+)	1257	WP_275548358.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50190.57 Da
• Isoelectric Point: 6.5112

>NTDB_id=1112348 P3C48_RS16610 WP_047127086.1 3881026..3882420(+) (pilR) [Xanthomonas arboricola pv. corylina strain CFBP 1159]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=1112348 P3C48_RS16610 WP_047127086.1 3881026..3882420(+) (pilR) [Xanthomonas arboricola pv. corylina strain CFBP 1159]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCTTGGGCCGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATTGAACTGGTTACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCTTTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGTGGCCTGGTCAAGCACGCCCTGGAATTGAACAACCGCGACCGCCCTGCCCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGATTCCAGTGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAACTGGTCGCCCGCACCATCCACGAACAAGGCGC
ACGCGCGGCCGGCCCGTTCGTGCCGGTCAACTGTGGCGCCATCCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTGGGCGC
TTCCAGCGAGTCGCTGGTGGACGTGCGCATTCTCTCGGCCACCCACAAGAACCTGGGCGACCTAGTCTCCGACGGCCGTT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCCATCATCGCGCGCCTGGCACATAGCCACGGCCGGCCGATTCCGCTGCTGACCCAGTCCGCACTCGA
CGCGCTGGACCAGTACGGCTTTCCCGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTCGCCGCCACTCCCGGCAGCGCCGCC
GTCGAACCCCGCGAAGCGGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCTTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCGCTGGAGGAGAATCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCAT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.067	99.784	0.629
pilR	Acinetobacter baumannii strain A118	49.138	100	0.491