Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GJA_RS20650 Genome accession   NZ_HG322949
Coordinates   4819891..4821120 (+) Length   409 a.a.
NCBI ID   WP_038496051.1    Uniprot ID   W0VCG8
Organism   Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4814891..4826120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJA_RS20635 (GJA_4448) - 4814972..4816447 (+) 1476 WP_081905661.1 DHA2 family efflux MFS transporter permease subunit -
  GJA_RS20640 (GJA_4449) - 4816643..4817941 (+) 1299 WP_038496047.1 HlyC/CorC family transporter -
  GJA_RS20645 (GJA_4450) pilF 4818130..4819857 (+) 1728 WP_038496049.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GJA_RS20650 (GJA_4451) pilC 4819891..4821120 (+) 1230 WP_038496051.1 type II secretion system F family protein Machinery gene
  GJA_RS20655 (GJA_4452) - 4821525..4821725 (+) 201 WP_144241606.1 hypothetical protein -
  GJA_RS20660 - 4821722..4821991 (-) 270 WP_038496054.1 hypothetical protein -
  GJA_RS20665 (GJA_4453) pilD 4822300..4823169 (+) 870 WP_038496056.1 A24 family peptidase Machinery gene
  GJA_RS20670 (GJA_4454) coaE 4823209..4823856 (+) 648 WP_038496058.1 dephospho-CoA kinase -
  GJA_RS20675 (GJA_4455) zapD 4823921..4824676 (+) 756 WP_038496060.1 cell division protein ZapD -
  GJA_RS26900 (GJA_4456) yacG 4824686..4824874 (+) 189 WP_081905662.1 DNA gyrase inhibitor YacG -
  GJA_RS20680 (GJA_4457) - 4824971..4825384 (-) 414 WP_038496062.1 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44701.89 Da        Isoelectric Point: 10.0624

>NTDB_id=1111904 GJA_RS20650 WP_038496051.1 4819891..4821120(+) (pilC) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
MATLGKTARDSQVKELIFAWEGKDKTGKTVRGEMRAGGEAVVNVTLRRQGIMVTKVKKKAYRSGKKITDKDISLFTRQLA
TMMRAGVPLLQSFDIVGKGHANPSVSKLVMDLRADIETGTSLNQAFRKYPLYFDPLFCNLVGAGEQAGILEDLLTRLAVY
KEKTLAIKGKIKSALTYPLAILAVAFIVTAVIMIWVVPAFKEVFKSFGAALPAPTLFVMALSEFFVNWWYLIFGGLFAVI
YFFFQAWRRSPKMQRFMDVAMLKVPVFGAVIRKATIARWTRTLATMFAAGVPLVESLDSVGGAAGNAVYLDATRRIQNEV
STGTSLTVAMQNADVFPNLVTQMVAIGEESGSLDAMLGKVADFYEEEVDEAVAALASLMEPMIMVILGVLIGGLVIAMYL
PIFKLGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1111904 GJA_RS20650 WP_038496051.1 4819891..4821120(+) (pilC) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
ATGGCCACATTGGGCAAAACGGCGCGGGACAGCCAGGTCAAGGAACTCATCTTTGCCTGGGAAGGCAAGGACAAGACCGG
CAAAACCGTGCGCGGAGAAATGCGCGCCGGCGGCGAGGCCGTGGTCAACGTCACCTTGCGCCGGCAAGGCATCATGGTGA
CCAAGGTCAAGAAAAAGGCTTACCGCAGCGGCAAGAAAATCACCGACAAGGATATCTCGCTGTTCACCCGCCAGCTGGCC
ACGATGATGCGCGCCGGCGTGCCGCTGCTGCAATCGTTCGACATCGTCGGCAAGGGCCATGCCAATCCGTCGGTGTCGAA
GCTGGTGATGGACTTGCGCGCCGACATAGAAACCGGCACCAGCCTGAACCAGGCTTTCCGCAAATACCCGCTGTATTTCG
ACCCGCTGTTTTGTAACCTGGTCGGCGCCGGCGAACAGGCCGGCATCCTGGAAGACTTGCTGACCCGGCTCGCGGTCTAC
AAGGAAAAGACGCTGGCCATCAAGGGCAAGATCAAGTCGGCGCTGACCTATCCGCTGGCGATCCTGGCGGTGGCCTTCAT
CGTCACGGCGGTGATCATGATCTGGGTGGTGCCGGCGTTCAAGGAAGTATTCAAGAGTTTTGGCGCGGCCTTGCCGGCGC
CGACACTGTTCGTCATGGCGCTGTCGGAATTTTTCGTCAATTGGTGGTACCTGATCTTCGGCGGCCTGTTCGCGGTGATC
TACTTCTTTTTCCAGGCCTGGCGCCGCTCGCCGAAGATGCAGCGCTTCATGGACGTGGCCATGCTGAAAGTGCCGGTATT
CGGCGCCGTGATACGCAAGGCGACCATCGCGCGCTGGACCCGCACGCTGGCGACCATGTTCGCGGCCGGCGTGCCGCTGG
TCGAATCGCTGGACTCGGTCGGCGGCGCGGCCGGCAACGCGGTCTACCTGGACGCCACCCGGCGCATCCAGAATGAAGTC
AGCACCGGCACCAGCCTGACGGTGGCGATGCAAAATGCCGACGTGTTCCCCAACCTGGTCACGCAAATGGTGGCGATCGG
CGAAGAGTCCGGCTCGCTCGACGCGATGCTGGGCAAGGTCGCCGATTTTTACGAGGAAGAAGTCGACGAGGCGGTGGCCG
CGCTGGCGTCGCTGATGGAACCGATGATCATGGTGATCCTGGGGGTGCTGATCGGCGGCCTGGTGATTGCCATGTATTTG
CCGATCTTCAAGCTGGGTTCGGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0VCG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55

97.8

0.538
  pilC Legionella pneumophila strain ERS1305867

54.02

97.311

0.526
  pilG Neisseria meningitidis 44/76-A

51.385

97.066

0.499
  pilG Neisseria gonorrhoeae MS11

51.385

97.066

0.499
  pilC Acinetobacter baylyi ADP1

49.877

99.511

0.496
  pilC Acinetobacter baumannii D1279779

50.63

97.066

0.491
  pilC Vibrio cholerae strain A1552

39.798

97.066

0.386
  pilC Vibrio campbellii strain DS40M4

38.636

96.822

0.374

Multiple sequence alignment