Detailed information NTG1111905

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GJA_RS20665
• Genome accession: NZ_HG322949
• Coordinates: 4822300..4823169 (+)
• Length: 289 a.a.
• NCBI ID: WP_038496056.1
• Uniprot ID: W0VBR1
• Organism: Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4817300..4828169

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GJA_RS20645 (GJA_4450)	pilF	4818130..4819857 (+)	1728	WP_038496049.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GJA_RS20650 (GJA_4451)	pilC	4819891..4821120 (+)	1230	WP_038496051.1	type II secretion system F family protein	Machinery gene
GJA_RS20655 (GJA_4452)	-	4821525..4821725 (+)	201	WP_144241606.1	hypothetical protein	-
GJA_RS20660	-	4821722..4821991 (-)	270	WP_038496054.1	hypothetical protein	-
GJA_RS20665 (GJA_4453)	pilD	4822300..4823169 (+)	870	WP_038496056.1	A24 family peptidase	Machinery gene
GJA_RS20670 (GJA_4454)	coaE	4823209..4823856 (+)	648	WP_038496058.1	dephospho-CoA kinase	-
GJA_RS20675 (GJA_4455)	zapD	4823921..4824676 (+)	756	WP_038496060.1	cell division protein ZapD	-
GJA_RS26900 (GJA_4456)	yacG	4824686..4824874 (+)	189	WP_081905662.1	DNA gyrase inhibitor YacG	-
GJA_RS20680 (GJA_4457)	-	4824971..4825384 (-)	414	WP_038496062.1	NUDIX domain-containing protein	-
GJA_RS20685 (GJA_4458)	-	4825371..4826249 (-)	879	WP_038496064.1	ATP-binding protein	-
GJA_RS20690 (GJA_4459)	argJ	4826246..4827484 (-)	1239	WP_038496066.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31060.95 Da
• Isoelectric Point: 6.8223

>NTDB_id=1111905 GJA_RS20665 WP_038496056.1 4822300..4823169(+) (pilD) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
MLQDTLLFAEPANLLVSLVAGLFGLLIGSFLNVVIYRIPKMMQRESDNYVAAESGHALPHTDRFNLMVPRSCCPHCDHQI
SALENIPLVSYLVLGGKCSACKAPISIRYPLVELLTGVLSAVLIWHFGSGWAGLSTLLFLYALLAMTFIDADTQLLPDDL
TLPLLWAGLLINIHATFVPLQDAVIGAAAGYLALWAVYWAFKLATGKEGMGYGDFKLLAALGAWLGWAMLPTIILLSSVV
GALVGITLIVFTKRGRDKPIPFGPYLAAAGLIALLYGTPLSHLTLSLLG

Nucleotide

• Length: 870 bp

>NTDB_id=1111905 GJA_RS20665 WP_038496056.1 4822300..4823169(+) (pilD) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
ATGCTGCAAGATACCCTGTTATTTGCCGAACCGGCCAACCTGCTGGTCAGCCTGGTCGCCGGCCTGTTCGGCTTGTTGAT
CGGTAGTTTCCTCAACGTCGTGATTTACCGCATCCCGAAGATGATGCAGCGCGAATCGGATAATTACGTGGCCGCCGAAA
GCGGCCACGCGCTGCCGCACACCGACCGCTTCAACCTGATGGTGCCGCGCTCGTGCTGTCCGCATTGCGACCACCAGATC
AGCGCGCTGGAAAACATTCCGCTAGTCAGCTACCTGGTCCTCGGCGGCAAATGCAGCGCCTGCAAGGCGCCGATCTCGAT
CCGCTATCCGCTGGTCGAATTGCTGACCGGCGTGCTGTCGGCGGTGCTGATCTGGCATTTCGGCAGCGGCTGGGCCGGCC
TGTCGACGCTGCTGTTCCTGTATGCGCTGCTGGCGATGACCTTCATCGACGCCGACACCCAGTTGTTGCCGGACGACTTG
ACCTTGCCGCTGCTGTGGGCCGGCTTGCTGATCAATATCCACGCTACTTTCGTGCCGCTGCAAGATGCCGTGATCGGCGC
CGCGGCCGGTTATCTGGCGCTGTGGGCCGTGTATTGGGCCTTCAAACTGGCGACAGGAAAAGAGGGAATGGGATATGGTG
ACTTCAAGTTGCTGGCCGCGCTGGGCGCCTGGCTGGGCTGGGCCATGCTGCCCACCATCATCCTGTTGTCATCGGTGGTC
GGCGCGCTGGTCGGCATTACATTGATCGTGTTCACCAAGCGCGGCCGTGACAAGCCGATTCCATTCGGCCCCTACCTGGC
CGCGGCTGGCTTGATCGCGCTGCTATACGGCACGCCGCTGTCGCACCTGACCCTCAGCCTTCTCGGCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

3D structure

• AlphaFold DB: W0VBR1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	58.427	92.388	0.54
pilD	Vibrio campbellii strain DS40M4	53.759	92.042	0.495
pilD	Neisseria gonorrhoeae MS11	53.488	89.273	0.478
pilD	Acinetobacter baumannii D1279779	47.203	98.962	0.467
pilD	Acinetobacter nosocomialis M2	46.853	98.962	0.464