Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACOI2Q_RS20140 Genome accession   NZ_CP184785
Coordinates   4499907..4501172 (+) Length   421 a.a.
NCBI ID   WP_420789192.1    Uniprot ID   -
Organism   Shewanella algae strain NJT6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4494907..4506172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOI2Q_RS20120 (ACOI2Q_20120) ampD 4495127..4495705 (-) 579 WP_051547208.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACOI2Q_RS20125 (ACOI2Q_20125) nadC 4495864..4496724 (+) 861 WP_025012052.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACOI2Q_RS20130 (ACOI2Q_20130) - 4497593..4498024 (+) 432 WP_342197588.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACOI2Q_RS20135 (ACOI2Q_20135) pilB 4498039..4499745 (+) 1707 WP_420789190.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACOI2Q_RS20140 (ACOI2Q_20140) pilC 4499907..4501172 (+) 1266 WP_420789192.1 type II secretion system F family protein Machinery gene
  ACOI2Q_RS20145 (ACOI2Q_20145) pilD 4501242..4502156 (+) 915 WP_342197585.1 A24 family peptidase Machinery gene
  ACOI2Q_RS20150 (ACOI2Q_20150) coaE 4502157..4502768 (+) 612 WP_054744929.1 dephospho-CoA kinase -
  ACOI2Q_RS20155 (ACOI2Q_20155) zapD 4502765..4503505 (+) 741 WP_028779562.1 cell division protein ZapD -
  ACOI2Q_RS20160 (ACOI2Q_20160) yacG 4503550..4503762 (+) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  ACOI2Q_RS20165 (ACOI2Q_20165) mutT 4503762..4504160 (+) 399 WP_420789195.1 8-oxo-dGTP diphosphatase MutT -
  ACOI2Q_RS20170 (ACOI2Q_20170) - 4504231..4504500 (+) 270 Protein_3924 transposase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45789.94 Da        Isoelectric Point: 10.2514

>NTDB_id=1111266 ACOI2Q_RS20140 WP_420789192.1 4499907..4501172(+) (pilC) [Shewanella algae strain NJT6]
MATAAATAKSNKSKNKNAKAQPKIHTFTWKGHNRDGKLSSGELRGASITEIKTLLKSQGINPKTVRKKSASMFGDKKIKP
MDIAVITRQIATMLAAGVPLVTSIELIARGHEKNKVRVLLGTVLADLQAGIPLSDALRPHRVYFDDLYVDLVAAGEHSGS
LDTVFDRIATYREKSEALKSKIKKAMFYPAAVVVVAIAVTVLLLVAVVPQFEEIFKGFGAELPAFTQLIVDISRALQSTW
YLFLASIVIGIWLFVRAHRNSENFRNRIDEMVLKIPAIGDILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNYVY
RKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
IVGGLIVGMYLPIFNLGKVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=1111266 ACOI2Q_RS20140 WP_420789192.1 4499907..4501172(+) (pilC) [Shewanella algae strain NJT6]
ATGGCAACCGCAGCGGCGACAGCAAAAAGTAATAAAAGCAAGAACAAAAACGCTAAAGCCCAACCCAAGATCCATACCTT
TACCTGGAAAGGGCATAATCGCGACGGCAAACTCAGCTCAGGCGAACTGCGTGGCGCCAGTATCACAGAGATAAAAACCC
TGCTTAAGAGCCAGGGAATCAATCCCAAGACGGTACGTAAAAAATCAGCTTCCATGTTTGGCGATAAAAAGATCAAGCCG
ATGGATATCGCGGTGATCACCCGTCAGATAGCCACTATGTTGGCTGCCGGCGTGCCACTGGTCACATCCATCGAGCTGAT
CGCCCGCGGCCATGAAAAAAACAAGGTGCGGGTTCTGCTTGGCACTGTGTTGGCCGATCTCCAGGCCGGTATCCCACTCT
CCGATGCCCTCCGCCCGCACAGAGTCTATTTTGACGACCTCTATGTCGACTTGGTGGCAGCCGGTGAACACTCTGGTTCT
TTGGATACCGTGTTTGATCGCATCGCCACCTATCGAGAAAAGTCAGAGGCCCTTAAGTCGAAAATCAAGAAAGCTATGTT
CTACCCTGCTGCAGTGGTGGTAGTTGCCATAGCCGTTACCGTACTGCTGCTTGTTGCCGTTGTACCTCAATTTGAAGAAA
TCTTTAAGGGATTCGGCGCCGAACTACCCGCCTTTACCCAGTTAATTGTCGATATCAGTCGCGCGTTACAAAGCACTTGG
TACCTTTTTTTGGCCAGCATAGTCATTGGTATCTGGCTCTTTGTCCGTGCTCATCGAAATTCAGAAAATTTCCGTAACCG
TATCGATGAAATGGTGCTCAAGATCCCCGCGATAGGAGATATCCTCCATAAAGGTGCCATGGCCCGCTTCGCCCGTACTC
TGGCCACCACTTTTGCCGCCGGGGTGCCGCTGATTGATGGCCTGGAGTCTGCCGCCGGTGCCTCCGGTAATTATGTTTAC
CGCAAAGCGCTGTTGAATGTGCGCACCGAAGTGATGGCCGGTATGCAGATGAATGTGGCCATGCGCACTACCAAGCTGTT
TCCCGATATGTTGATCCAGATGGTGATGATAGGTGAAGAATCCGGCTCATTGGACAACATGCTCAACAAAGTCGCCAATA
TCTATGAGATGCAGGTAGACGATGCCGTAGATGGGCTCTCCAGCCTGATAGAACCTATTATGATGGTAGTTATCGGCACT
ATAGTCGGCGGGCTTATCGTCGGCATGTATCTACCTATCTTCAACTTGGGTAAAGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.388

94.774

0.525
  pilC Acinetobacter baylyi ADP1

49.507

96.437

0.477
  pilC Legionella pneumophila strain ERS1305867

48.515

95.962

0.466
  pilC Acinetobacter baumannii D1279779

47.549

96.912

0.461
  pilC Vibrio cholerae strain A1552

46.633

95.249

0.444
  pilC Vibrio campbellii strain DS40M4

44.417

95.724

0.425
  pilG Neisseria meningitidis 44/76-A

43

95.012

0.409
  pilG Neisseria gonorrhoeae MS11

43

95.012

0.409

Multiple sequence alignment