Detailed information NTG1111267

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACOI2Q_RS20145
• Genome accession: NZ_CP184785
• Coordinates: 4501242..4502156 (+)
• Length: 304 a.a.
• NCBI ID: WP_342197585.1
• Uniprot ID: -
• Organism: Shewanella algae strain NJT6
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4496242..4507156

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACOI2Q_RS20130 (ACOI2Q_20130)	-	4497593..4498024 (+)	432	WP_342197588.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
ACOI2Q_RS20135 (ACOI2Q_20135)	pilB	4498039..4499745 (+)	1707	WP_420789190.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACOI2Q_RS20140 (ACOI2Q_20140)	pilC	4499907..4501172 (+)	1266	WP_420789192.1	type II secretion system F family protein	Machinery gene
ACOI2Q_RS20145 (ACOI2Q_20145)	pilD	4501242..4502156 (+)	915	WP_342197585.1	A24 family peptidase	Machinery gene
ACOI2Q_RS20150 (ACOI2Q_20150)	coaE	4502157..4502768 (+)	612	WP_054744929.1	dephospho-CoA kinase	-
ACOI2Q_RS20155 (ACOI2Q_20155)	zapD	4502765..4503505 (+)	741	WP_028779562.1	cell division protein ZapD	-
ACOI2Q_RS20160 (ACOI2Q_20160)	yacG	4503550..4503762 (+)	213	WP_025886789.1	DNA gyrase inhibitor YacG	-
ACOI2Q_RS20165 (ACOI2Q_20165)	mutT	4503762..4504160 (+)	399	WP_420789195.1	8-oxo-dGTP diphosphatase MutT	-
ACOI2Q_RS20170 (ACOI2Q_20170)	-	4504231..4504500 (+)	270	Protein_3924	transposase	-

Sequence

Protein

• Length: 304 a.a.
• Molecular weight: 33869.24 Da
• Isoelectric Point: 7.2147

>NTDB_id=1111267 ACOI2Q_RS20145 WP_342197585.1 4501242..4502156(+) (pilD) [Shewanella algae strain NJT6]
MSEFIAVLSHNQWLFLVLCFLFASVIGSFLNVVIHRLPVMMKREWQQECNQYLQEYQPEFAKQLGEAKLNAPIDNYPAKY
NLILPKSACPKCGAHIKPWHNLPIIGYLLLGGKCASCNTAISARYPIFELLTALLISTLGWYFGPTLQFVYATILTFGLI
ALSGIDLDEMLLPDQITLPLLWLGLLVNISGTFTNLTDATIGATAGYLSLWSVYWLFKLLTGKEGMGYGDFKLMALFGAW
LGWQMLPLIILLSSLVGALVGVLLILFKNLNRGNPIPFGPYIAIAGWVALVWGQQIVDWYLGTL

Nucleotide

• Length: 915 bp

>NTDB_id=1111267 ACOI2Q_RS20145 WP_342197585.1 4501242..4502156(+) (pilD) [Shewanella algae strain NJT6]
ATGTCAGAATTTATTGCCGTATTGAGCCACAACCAGTGGCTCTTTCTTGTTCTCTGTTTTTTGTTTGCCTCAGTGATAGG
CAGCTTTCTCAATGTGGTAATCCATCGCCTGCCGGTAATGATGAAGCGCGAATGGCAGCAGGAATGCAATCAATACCTGC
AGGAATATCAACCCGAATTCGCCAAACAGCTAGGTGAAGCCAAGCTTAATGCACCAATAGATAACTATCCGGCCAAATAC
AATCTGATACTGCCGAAGTCTGCCTGCCCCAAGTGTGGCGCCCATATCAAACCCTGGCACAACCTCCCCATAATCGGCTA
TTTGTTGCTTGGCGGTAAATGCGCCTCCTGCAACACAGCTATTTCAGCGAGATACCCAATATTTGAGCTGCTGACCGCCC
TACTTATCAGTACTCTCGGTTGGTATTTTGGCCCGACACTGCAGTTTGTTTACGCCACTATTCTCACCTTTGGATTGATA
GCACTCAGCGGGATAGATTTGGATGAAATGCTGCTGCCGGATCAGATTACCCTGCCGCTACTGTGGCTTGGTTTACTGGT
TAATATCTCGGGCACCTTTACTAATTTGACCGATGCCACCATAGGGGCCACTGCCGGCTATCTAAGTCTTTGGTCGGTCT
ACTGGCTATTTAAACTGCTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCAAGCTGATGGCATTGTTTGGCGCCTGG
CTTGGCTGGCAGATGTTACCTCTAATTATTCTGCTCTCTTCTCTGGTCGGTGCCCTAGTAGGCGTTTTACTTATTCTGTT
CAAGAACCTTAATCGGGGTAACCCTATCCCCTTTGGCCCTTATATTGCTATCGCAGGTTGGGTCGCTTTGGTGTGGGGAC
AACAGATTGTCGACTGGTATTTGGGAACACTCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-143)

• Type IV leader peptidase family (Peptidase_A24) (154-262)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	49.169	99.013	0.487
pilD	Vibrio cholerae strain A1552	50	96.053	0.48
pilD	Acinetobacter nosocomialis M2	48.013	99.342	0.477
pilD	Acinetobacter baumannii D1279779	47.682	99.342	0.474
pilD	Neisseria gonorrhoeae MS11	45.196	92.434	0.418