Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACOI2P_RS02035 Genome accession   NZ_CP184784
Coordinates   415492..416760 (-) Length   422 a.a.
NCBI ID   WP_039033595.1    Uniprot ID   -
Organism   Shewanella chilikensis strain NTT9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410492..421760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOI2P_RS02010 (ACOI2P_02010) mutT 412499..412897 (-) 399 WP_101055951.1 8-oxo-dGTP diphosphatase MutT -
  ACOI2P_RS02015 (ACOI2P_02015) yacG 412894..413109 (-) 216 WP_039033599.1 DNA gyrase inhibitor YacG -
  ACOI2P_RS02020 (ACOI2P_02020) zapD 413154..413894 (-) 741 WP_165564352.1 cell division protein ZapD -
  ACOI2P_RS02025 (ACOI2P_02025) coaE 413891..414502 (-) 612 WP_101055953.1 dephospho-CoA kinase -
  ACOI2P_RS02030 (ACOI2P_02030) pilD 414503..415417 (-) 915 WP_412503030.1 prepilin peptidase Machinery gene
  ACOI2P_RS02035 (ACOI2P_02035) pilC 415492..416760 (-) 1269 WP_039033595.1 type II secretion system F family protein Machinery gene
  ACOI2P_RS02040 (ACOI2P_02040) pilB 416936..418642 (-) 1707 WP_412523386.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACOI2P_RS02045 (ACOI2P_02045) - 418698..419144 (-) 447 WP_412486655.1 pilin -
  ACOI2P_RS02050 (ACOI2P_02050) - 419213..419593 (+) 381 WP_286997984.1 hypothetical protein -
  ACOI2P_RS02055 (ACOI2P_02055) nadC 420157..421017 (-) 861 WP_101055958.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACOI2P_RS02060 (ACOI2P_02060) ampD 421176..421754 (+) 579 WP_342209518.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45903.23 Da        Isoelectric Point: 10.2875

>NTDB_id=1111223 ACOI2P_RS02035 WP_039033595.1 415492..416760(-) (pilC) [Shewanella chilikensis strain NTT9]
MATATATAKNNKAKTKGAKAQAKIYTFTWKGLNRDGKQSSGELRGASIAEIKSLLKNQGINPKLVRKKSASLFGGDKKIK
PMDIAVITRQIATMLAAGVPLVTSIELIARGHEKNKVRILLGTVLADVQAGIPLSDALRPHRAYFDDLYVDLVAAGEHSG
SLDAVFDRIATYREKAEALKSKIKKAMFYPAAVVVVAIAVTVLLLLFVVPQFESIFAGFGAELPAFTQLIVNISRWLQST
WYLFLAAIVIGVWLFVRAHRNSEKFRNRIDEMVLKIPLIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNYV
YRKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIG
TLVGGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1111223 ACOI2P_RS02035 WP_039033595.1 415492..416760(-) (pilC) [Shewanella chilikensis strain NTT9]
ATGGCCACAGCAACGGCAACAGCTAAAAACAATAAAGCCAAAACCAAAGGTGCCAAGGCTCAAGCCAAGATCTACACCTT
CACCTGGAAAGGTCTTAACCGCGATGGCAAGCAAAGCTCCGGCGAATTGCGCGGCGCCAGCATTGCCGAAATCAAAAGCT
TGCTGAAAAACCAGGGGATTAATCCCAAACTGGTACGTAAAAAGTCTGCCTCTCTCTTTGGTGGTGATAAAAAAATCAAG
CCGATGGATATCGCGGTGATCACCCGCCAGATAGCCACCATGCTGGCCGCAGGTGTGCCCTTGGTGACCTCCATCGAGTT
GATTGCCCGCGGCCATGAGAAAAACAAGGTGCGTATTTTGCTGGGCACTGTGCTGGCCGATGTTCAGGCCGGTATTCCCC
TTTCCGATGCCCTGCGCCCCCACAGGGCTTATTTCGACGATCTCTATGTCGACCTGGTGGCCGCCGGGGAACATTCCGGC
TCTTTGGATGCGGTATTTGACCGTATCGCGACCTACAGAGAAAAAGCCGAGGCGCTCAAGTCCAAGATCAAAAAAGCCAT
GTTCTATCCCGCGGCGGTAGTTGTGGTTGCCATAGCAGTTACTGTGCTGCTATTGCTGTTTGTAGTACCTCAGTTCGAAA
GTATCTTTGCCGGCTTTGGCGCCGAACTGCCCGCCTTTACCCAGTTGATAGTTAATATAAGCCGTTGGCTGCAAAGTACC
TGGTATCTGTTTCTCGCGGCAATTGTTATCGGGGTTTGGCTGTTTGTCCGCGCCCATCGCAACTCGGAAAAGTTTCGTAA
CCGTATCGATGAAATGGTGCTTAAAATTCCCCTGATTGGCGAAATTCTCCATAAGGCTGCCATGGCCCGTTTCGCCCGCA
CCCTGGCCACTACCTTTGCCGCCGGGGTACCGCTGATTGATGGCCTGGAGTCTGCCGCCGGCGCCTCCGGTAACTATGTC
TACCGCAAGGCCCTGCTGAATGTACGTACCGAAGTGATGGCCGGTATGCAGATGAACGTGGCCATGCGTACCACCAAGCT
GTTTCCCGATATGCTGATCCAGATGGTGATGATAGGTGAGGAATCCGGTTCACTGGATAATATGCTCAACAAGATAGCCA
ATATTTATGAGATGCAGGTAGATGACGCCGTAGACGGGCTTTCCAGCCTGATTGAACCCATTATGATGGTGGTGATAGGT
ACTCTGGTAGGCGGCCTTATTGTAGGTATGTACCTGCCTATCTTCCAAATGGGTAACGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.188

95.735

0.538
  pilC Acinetobacter baylyi ADP1

50.246

96.209

0.483
  pilC Legionella pneumophila strain ERS1305867

49.257

95.735

0.472
  pilC Acinetobacter baumannii D1279779

49.497

94.313

0.467
  pilC Vibrio cholerae strain A1552

47.236

94.313

0.445
  pilC Vibrio campbellii strain DS40M4

44.776

95.261

0.427
  pilG Neisseria meningitidis 44/76-A

43.081

90.758

0.391
  pilG Neisseria gonorrhoeae MS11

43.081

90.758

0.391

Multiple sequence alignment