Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACOI2P_RS02030 Genome accession   NZ_CP184784
Coordinates   414503..415417 (-) Length   304 a.a.
NCBI ID   WP_412503030.1    Uniprot ID   -
Organism   Shewanella chilikensis strain NTT9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 409503..420417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOI2P_RS02010 (ACOI2P_02010) mutT 412499..412897 (-) 399 WP_101055951.1 8-oxo-dGTP diphosphatase MutT -
  ACOI2P_RS02015 (ACOI2P_02015) yacG 412894..413109 (-) 216 WP_039033599.1 DNA gyrase inhibitor YacG -
  ACOI2P_RS02020 (ACOI2P_02020) zapD 413154..413894 (-) 741 WP_165564352.1 cell division protein ZapD -
  ACOI2P_RS02025 (ACOI2P_02025) coaE 413891..414502 (-) 612 WP_101055953.1 dephospho-CoA kinase -
  ACOI2P_RS02030 (ACOI2P_02030) pilD 414503..415417 (-) 915 WP_412503030.1 prepilin peptidase Machinery gene
  ACOI2P_RS02035 (ACOI2P_02035) pilC 415492..416760 (-) 1269 WP_039033595.1 type II secretion system F family protein Machinery gene
  ACOI2P_RS02040 (ACOI2P_02040) pilB 416936..418642 (-) 1707 WP_412523386.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACOI2P_RS02045 (ACOI2P_02045) - 418698..419144 (-) 447 WP_412486655.1 pilin -
  ACOI2P_RS02050 (ACOI2P_02050) - 419213..419593 (+) 381 WP_286997984.1 hypothetical protein -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 33894.47 Da        Isoelectric Point: 7.5953

>NTDB_id=1111222 ACOI2P_RS02030 WP_412503030.1 414503..415417(-) (pilD) [Shewanella chilikensis strain NTT9]
MSDFIAILSHNLWLFLVLCFLFASVIGSFLNVVIHRLPVMMKREWQQECNQYLQEYQPEFAKQIGEAKLNAAIDNYPAKY
NLLLPKSACPKCGAHIKPWHNLPIIGYLMLGGKCAACKDKISARYPLFELLTALLICTLAWHFGPTLQFVYATILTFGLI
ALSGIDLDEMLLPDQLTLPLLWLGLLINISGTFTSITDATIGAAAGYLSLWSIYWLFKLITGKEGMGYGDFKLMALFGAW
LGWQMLPLIILLSSLVGALVGVLLIVFKNLNRGNPIPFGPYIAIAGWVAMVWGQQIVDWYLGTL

Nucleotide


Download         Length: 915 bp        

>NTDB_id=1111222 ACOI2P_RS02030 WP_412503030.1 414503..415417(-) (pilD) [Shewanella chilikensis strain NTT9]
ATGTCAGACTTTATTGCCATATTGAGCCACAATCTGTGGCTCTTTCTTGTTCTCTGTTTTCTGTTTGCCTCCGTGATAGG
CAGCTTTCTCAATGTAGTGATCCACCGCCTGCCGGTAATGATGAAGCGCGAATGGCAGCAGGAATGCAATCAATACCTGC
AGGAATACCAACCCGAATTCGCCAAACAGATAGGTGAAGCCAAGCTCAATGCTGCAATAGATAACTACCCGGCCAAGTAC
AATCTGTTACTGCCAAAGTCTGCCTGCCCCAAGTGCGGCGCTCATATCAAACCCTGGCACAACTTACCCATAATCGGCTA
CCTGATGCTTGGCGGTAAATGCGCCGCCTGTAAAGACAAAATCTCGGCCAGGTATCCTCTATTCGAATTGTTGACGGCCC
TACTCATTTGTACGCTCGCTTGGCACTTTGGCCCGACACTGCAGTTTGTTTACGCCACTATTCTGACCTTTGGACTAATA
GCCCTTAGCGGCATAGATTTGGATGAGATGCTACTGCCGGATCAGCTTACCCTGCCGCTGCTGTGGCTCGGTTTACTGAT
TAATATCTCCGGCACTTTTACCAGCATTACCGATGCCACCATAGGCGCCGCAGCCGGTTATTTAAGCCTCTGGTCTATCT
ACTGGCTGTTCAAATTAATCACCGGCAAGGAAGGCATGGGTTATGGCGATTTCAAGCTGATGGCTCTATTCGGCGCCTGG
CTGGGCTGGCAGATGCTGCCACTGATAATTCTGCTCTCTTCTTTGGTGGGCGCCCTGGTAGGTGTGTTACTCATAGTGTT
CAAGAACCTCAATCGGGGTAACCCCATTCCCTTTGGCCCCTATATTGCCATAGCCGGTTGGGTTGCCATGGTGTGGGGGC
AACAGATAGTTGACTGGTACTTGGGAACACTTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-143)

Type IV leader peptidase family (Peptidase_A24)

(154-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

50

99.342

0.497
  pilD Vibrio cholerae strain A1552

51.37

96.053

0.493
  pilD Acinetobacter baumannii D1279779

49.669

99.342

0.493
  pilD Vibrio campbellii strain DS40M4

48.837

99.013

0.484
  pilD Neisseria gonorrhoeae MS11

44.84

92.434

0.414

Multiple sequence alignment