Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACGHC0_RS18895 Genome accession   NZ_AP035783
Coordinates   4254924..4256141 (+) Length   405 a.a.
NCBI ID   WP_415266442.1    Uniprot ID   -
Organism   Acidovorax sacchari strain HC-19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4249924..4261141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHC0_RS18870 (AVXHC19_37530) rpmA 4250998..4251255 (-) 258 WP_011796716.1 50S ribosomal protein L27 -
  ACGHC0_RS18875 (AVXHC19_37540) rplU 4251268..4251579 (-) 312 WP_011796717.1 50S ribosomal protein L21 -
  ACGHC0_RS18880 (AVXHC19_37550) - 4251765..4252745 (+) 981 WP_368352428.1 polyprenyl synthetase family protein -
  ACGHC0_RS18890 (AVXHC19_37560) pilB 4253156..4254892 (+) 1737 WP_368352429.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACGHC0_RS18895 (AVXHC19_37570) pilC 4254924..4256141 (+) 1218 WP_415266442.1 type II secretion system F family protein Machinery gene
  ACGHC0_RS18900 (AVXHC19_37580) - 4256141..4257073 (+) 933 WP_415266443.1 prepilin peptidase -
  ACGHC0_RS18905 (AVXHC19_37590) coaE 4257070..4257696 (+) 627 WP_415266444.1 dephospho-CoA kinase -
  ACGHC0_RS18910 (AVXHC19_37600) zapD 4257761..4258516 (+) 756 WP_368352433.1 cell division protein ZapD -
  ACGHC0_RS18915 (AVXHC19_37610) - 4258543..4258800 (+) 258 WP_368352434.1 DNA gyrase inhibitor YacG -
  ACGHC0_RS18920 (AVXHC19_37620) - 4258826..4259281 (-) 456 WP_368352435.1 NUDIX domain-containing protein -
  ACGHC0_RS18925 (AVXHC19_37630) - 4259274..4260146 (-) 873 WP_368352436.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44540.49 Da        Isoelectric Point: 9.2189

>NTDB_id=110806 ACGHC0_RS18895 WP_415266442.1 4254924..4256141(+) (pilC) [Acidovorax sacchari strain HC-19]
MATAASRDIKDFVFEWEGKDRHGKVVRGEVRALGENQVQATLRRQGVLPTKIKKRRMRGGKKIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNASVTKLLNDIRADVETGTSLNAAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLALYMEKT
EAIKSKIRSALMYPTAVIIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLFVMGVSEIFVKWWWLIFGVLGGGAFFFM
QAWRRNEKMQMFMDRLLLRLPVFGALIDKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNSVYAMATERIQQEVSTGT
SLTAAMGNANVFPSMVIQMCAIGEESGSIDHMLGKAADFYEEEVDEMVAGLSSLMEPIIIVFLGTIIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=110806 ACGHC0_RS18895 WP_415266442.1 4254924..4256141(+) (pilC) [Acidovorax sacchari strain HC-19]
ATGGCAACCGCTGCATCGAGGGACATCAAGGATTTCGTTTTCGAGTGGGAAGGCAAGGACCGCCACGGCAAGGTCGTGCG
CGGCGAGGTCCGGGCCCTGGGCGAGAACCAGGTCCAGGCGACGCTGCGGCGCCAGGGGGTGCTGCCCACCAAGATCAAGA
AGCGCCGCATGCGCGGCGGCAAGAAGATCAAGCCCAAGGACATCGCGCTCTTCACGCGGCAGATGGCCACGATGATGAAG
GCCGGGGTGCCCCTGCTGCAGGCCTTCGACATCGTGGGACGCGGCAATACCAACGCGTCGGTCACCAAGCTGCTCAACGA
CATCCGCGCCGATGTGGAAACCGGTACGTCGCTGAACGCGGCCTTCCGCAAGTACCCGATGTACTTCGACAGCCTGTACT
GCAACCTGGTGGAAGCCGGGGAGGCGGCGGGTATCCTAGAAGCGCTGCTCGACCGGCTCGCGCTCTACATGGAGAAGACC
GAGGCCATCAAGTCGAAGATCCGCTCGGCGCTGATGTATCCGACGGCCGTGATCATCGTGGCTTTCGTCGTGGTCACCGT
CATCATGATCTTCGTGATCCCTGCGTTCAAGGAGGTGTTCACCTCCTTCGGCGCGGACCTGCCGGCGCCGACCCTGTTCG
TGATGGGCGTCAGCGAGATCTTCGTGAAGTGGTGGTGGCTGATCTTCGGCGTGCTGGGCGGCGGTGCCTTCTTCTTCATG
CAGGCGTGGCGGCGCAACGAGAAGATGCAGATGTTCATGGACCGGCTGCTGCTGCGTCTTCCGGTCTTCGGCGCCCTGAT
CGACAAGTCCTGCGTGGCACGCTGGACCCGCACCCTCTCCACGATGTTCGCGGCGGGCGTTCCGCTGGTCGAGGCGCTGG
ACTCGGTGGGTGGTGCCTCGGGCAATTCGGTCTATGCCATGGCGACCGAGAGGATCCAGCAGGAAGTCTCCACCGGCACC
AGCCTGACGGCCGCGATGGGCAACGCGAACGTGTTCCCCTCGATGGTGATCCAGATGTGCGCCATCGGCGAGGAGTCGGG
CTCGATCGACCACATGCTGGGCAAGGCGGCCGACTTCTACGAGGAAGAGGTCGATGAAATGGTCGCGGGACTGTCGAGCC
TCATGGAGCCGATCATCATCGTGTTCCTGGGGACCATCATCGGCGGCATCGTGGTGTCGATGTACCTGCCCATCTTCAAG
CTGGGACAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.713

99.753

0.536
  pilG Neisseria gonorrhoeae MS11

50.877

98.519

0.501
  pilG Neisseria meningitidis 44/76-A

50.627

98.519

0.499
  pilC Acinetobacter baylyi ADP1

48.995

98.272

0.481
  pilC Legionella pneumophila strain ERS1305867

48.744

98.272

0.479
  pilC Acinetobacter baumannii D1279779

47.607

98.025

0.467
  pilC Vibrio cholerae strain A1552

40.05

98.025

0.393
  pilC Vibrio campbellii strain DS40M4

38.75

98.765

0.383
  pilC Thermus thermophilus HB27

38.596

98.519

0.38

Multiple sequence alignment