Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HZ99_RS26625 Genome accession   NZ_CP008896
Coordinates   5914704..5915039 (+) Length   111 a.a.
NCBI ID   WP_038447412.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain UK4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5909704..5920039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ99_RS26610 (HZ99_27180) - 5910672..5912666 (+) 1995 WP_038447406.1 polysaccharide biosynthesis protein -
  HZ99_RS26615 (HZ99_27185) - 5912732..5913472 (-) 741 WP_038447408.1 acyltransferase -
  HZ99_RS26620 (HZ99_27190) - 5913527..5914387 (-) 861 WP_038447410.1 3-hydroxyacyl-CoA dehydrogenase family protein -
  HZ99_RS26625 (HZ99_27195) comEA/comE1 5914704..5915039 (+) 336 WP_038447412.1 ComEA family DNA-binding protein Machinery gene
  HZ99_RS26630 (HZ99_27200) - 5915057..5915647 (-) 591 WP_038447414.1 TetR/AcrR family transcriptional regulator -
  HZ99_RS28205 - 5915782..5915949 (-) 168 WP_080727760.1 DUF2897 family protein -
  HZ99_RS26635 (HZ99_27210) eat 5916061..5917425 (-) 1365 WP_038447416.1 ethanolamine permease -
  HZ99_RS26640 kdpF 5917825..5917914 (+) 90 WP_032863112.1 K(+)-transporting ATPase subunit F -
  HZ99_RS26645 (HZ99_27220) kdpA 5917923..5919617 (+) 1695 WP_038447418.1 potassium-transporting ATPase subunit KdpA -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 11914.68 Da        Isoelectric Point: 10.1998

>NTDB_id=110805 HZ99_RS26625 WP_038447412.1 5914704..5915039(+) (comEA/comE1) [Pseudomonas fluorescens strain UK4]
MRRSVFSSLVFVVLTSLSVTAIAAPSSKPEAPVPLAAQLNTSEQPSSKVNLNTADAETLRRDLFGIGAAKARAIIAYRES
NGSFTAVDELLEVKGIGKSLLEKNRDRLEIK

Nucleotide


Download         Length: 336 bp        

>NTDB_id=110805 HZ99_RS26625 WP_038447412.1 5914704..5915039(+) (comEA/comE1) [Pseudomonas fluorescens strain UK4]
ATGCGTAGATCCGTTTTTTCCTCCCTGGTTTTTGTCGTTCTCACGAGCTTGTCCGTCACAGCCATCGCCGCCCCATCGTC
CAAACCCGAGGCGCCAGTGCCGCTCGCTGCTCAGTTGAATACGAGCGAACAACCAAGCTCCAAGGTCAATCTCAACACTG
CAGACGCTGAAACCCTGCGCCGTGACCTGTTTGGCATTGGCGCCGCCAAGGCCAGGGCAATCATTGCCTACCGTGAGTCC
AACGGATCGTTCACGGCGGTGGACGAGTTGCTGGAAGTGAAGGGGATTGGCAAGTCGCTGCTGGAGAAGAATCGCGACAG
GCTGGAGATTAAGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(46-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.541

100

0.405

Multiple sequence alignment