Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACN19N_RS14035 Genome accession   NZ_CP184160
Coordinates   2920792..2922018 (+) Length   408 a.a.
NCBI ID   WP_269228986.1    Uniprot ID   A0A9E9L4V7
Organism   Acinetobacter sp. LF10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2915792..2927018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN19N_RS14000 (ACN19N_14000) rimP 2916424..2916948 (-) 525 WP_269228983.1 ribosome maturation factor RimP -
  ACN19N_RS14020 (ACN19N_14020) secG 2917574..2917903 (-) 330 WP_005162938.1 preprotein translocase subunit SecG -
  ACN19N_RS14025 (ACN19N_14025) tpiA 2917916..2918707 (-) 792 WP_420001594.1 triose-phosphate isomerase -
  ACN19N_RS14030 (ACN19N_14030) pilB 2919052..2920767 (+) 1716 WP_269228985.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACN19N_RS14035 (ACN19N_14035) pilC 2920792..2922018 (+) 1227 WP_269228986.1 type II secretion system F family protein Machinery gene
  ACN19N_RS14040 (ACN19N_14040) pilD 2922018..2922878 (+) 861 WP_269228987.1 prepilin peptidase Machinery gene
  ACN19N_RS14045 (ACN19N_14045) coaE 2922880..2923485 (+) 606 WP_269238964.1 dephospho-CoA kinase -
  ACN19N_RS14050 (ACN19N_14050) - 2923482..2924393 (-) 912 WP_269238963.1 DMT family transporter -
  ACN19N_RS14055 (ACN19N_14055) rlmB 2924424..2925173 (-) 750 WP_269238962.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACN19N_RS14060 (ACN19N_14060) - 2925355..2925681 (-) 327 WP_004659291.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44987.51 Da        Isoelectric Point: 9.8648

>NTDB_id=1108026 ACN19N_RS14035 WP_269228986.1 2920792..2922018(+) (pilC) [Acinetobacter sp. LF10]
MAVKKAQMMPTFAYEGIDRKGAKIKGEVPARNMALAKVTLRKQGITIKNIREKRKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPISVLIVAVIVTVILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSNWTQKYWFILIIVIATLIA
CVLETKKRSKKFRDFLDKMALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRVSNKFPSMAIQMVAIGEESGALDTMLDKVATHFENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVM

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1108026 ACN19N_RS14035 WP_269228986.1 2920792..2922018(+) (pilC) [Acinetobacter sp. LF10]
ATGGCAGTTAAAAAAGCGCAAATGATGCCTACTTTTGCCTATGAAGGAATAGATCGTAAAGGGGCTAAAATCAAAGGGGA
AGTTCCAGCACGCAACATGGCTTTAGCCAAAGTCACGTTACGAAAACAAGGAATTACCATTAAAAATATTCGAGAAAAAC
GCAAAAATATTCTCGAAGGTTTAATGAAGAAAAAAGTATCAACATTAGATATTACGATTTTTACTCGTCAATTAGCAACC
ATGATGAAAGCAGGCGTACCCTTAGTACAAGGCTTTGAGATCGTCGCCGAGGGTTTAGAAAATCCCTCTATGCGTGAAGT
TGTACTAGGAATTAAAGGGGAAGTTGAAGGTGGCAATACATTTGCTGGCGCGCTAAAAAAATATCCCCAACATTTTGATA
ATCTATTCTGTTCATTAGTTGAATCGGGTGAGCAATCGGGTGCATTAGAAACTATGCTAGATCGTGTTGCGATCTATAAA
GAAAAAAGCGAATTATTAAAACAAAAAATTAAAAAAGCCATGAAATATCCAATTAGTGTTCTTATTGTAGCCGTGATTGT
AACTGTGATTTTAATGGTTAAAGTCGTTCCAGTGTTTCAAGACCTATTTAGTTCCTTCGGTGCAGATCTTCCAGCATTTA
CTCAAATGGTTGTAAACATGTCCAATTGGACACAGAAATACTGGTTTATCTTAATTATAGTAATTGCAACATTAATTGCC
TGCGTCTTAGAAACAAAAAAACGTAGTAAAAAATTCAGAGACTTTTTAGATAAAATGGCACTCAAAGCACCTATTTTTGG
TGATCTAGTCTATAAAGCGATTATTGCTCGTTATAGCCGTACACTTGCAACCACTTTTGCCGCTGGTGTACCACTGATTG
ATGCTCTCGAATCTACAGCTGGTGCAACGAATAATGTTGTTTACGAAGAAGCTGTGATGAAAATTCGTGAGGATGTCGCA
ACAGGTCAACAGCTACAATTTGCGATGCGTGTGTCAAATAAATTCCCGTCCATGGCGATTCAAATGGTTGCAATTGGTGA
AGAATCTGGAGCATTGGACACGATGTTAGATAAGGTCGCAACACATTTTGAAAATGAAGTGGATAATGCAGTCGATGGCT
TAACATCAATGATGGAACCACTGATCATGGCGGTATTAGGTGTACTCGTGGGTGGTCTAGTTATCGCGATGTACCTTCCT
ATTTTCCAAATGGGATCAGTAATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.435

99.755

0.892
  pilC Acinetobacter baylyi ADP1

82.353

100

0.824
  pilC Pseudomonas stutzeri DSM 10701

59.259

99.265

0.588
  pilC Legionella pneumophila strain ERS1305867

51.613

98.775

0.51
  pilG Neisseria meningitidis 44/76-A

45.592

97.304

0.444
  pilG Neisseria gonorrhoeae MS11

45.592

97.304

0.444
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

42.079

99.02

0.417

Multiple sequence alignment