Detailed information NTG1108027

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACN19N_RS14040
• Genome accession: NZ_CP184160
• Coordinates: 2922018..2922878 (+)
• Length: 286 a.a.
• NCBI ID: WP_269228987.1
• Uniprot ID: -
• Organism: Acinetobacter sp. LF10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2917018..2927878

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN19N_RS14020 (ACN19N_14020)	secG	2917574..2917903 (-)	330	WP_005162938.1	preprotein translocase subunit SecG	-
ACN19N_RS14025 (ACN19N_14025)	tpiA	2917916..2918707 (-)	792	WP_420001594.1	triose-phosphate isomerase	-
ACN19N_RS14030 (ACN19N_14030)	pilB	2919052..2920767 (+)	1716	WP_269228985.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACN19N_RS14035 (ACN19N_14035)	pilC	2920792..2922018 (+)	1227	WP_269228986.1	type II secretion system F family protein	Machinery gene
ACN19N_RS14040 (ACN19N_14040)	pilD	2922018..2922878 (+)	861	WP_269228987.1	prepilin peptidase	Machinery gene
ACN19N_RS14045 (ACN19N_14045)	coaE	2922880..2923485 (+)	606	WP_269238964.1	dephospho-CoA kinase	-
ACN19N_RS14050 (ACN19N_14050)	-	2923482..2924393 (-)	912	WP_269238963.1	DMT family transporter	-
ACN19N_RS14055 (ACN19N_14055)	rlmB	2924424..2925173 (-)	750	WP_269238962.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ACN19N_RS14060 (ACN19N_14060)	-	2925355..2925681 (-)	327	WP_004659291.1	pyrimidine/purine nucleoside phosphorylase	-
ACN19N_RS14065 (ACN19N_14065)	recN	2926024..2927682 (+)	1659	WP_269238961.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31913.35 Da
• Isoelectric Point: 7.5618

>NTDB_id=1108027 ACN19N_RS14040 WP_269228987.1 2922018..2922878(+) (pilD) [Acinetobacter sp. LF10]
MHQFLSYFIDNPTALYVAVGLLSLCIGSFLNVVIYRTPKMMEQEWHHECQMLLHPEQPIIDETKLTLSTPPSTCPKCKSA
IHWYQNIPVMSWLMLRGKCGACQNPISIRYPLIELLTMICSLIVVAIFGATVQMLFGLILTWVLITLTFIDFDTQLLPDR
FTLPLAALGLGINSFTIYTSAGSAIWGYLIGFLCLWIVYYIFKLVTGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSV
VGAIIGIILIKMRGENQPFAFGPYIAIAGWIAFLWGNQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1108027 ACN19N_RS14040 WP_269228987.1 2922018..2922878(+) (pilD) [Acinetobacter sp. LF10]
ATGCATCAATTTTTATCTTACTTTATAGACAACCCAACTGCGTTATATGTCGCAGTTGGACTTTTAAGTTTATGCATTGG
TAGTTTTTTAAATGTCGTCATCTATAGAACACCAAAGATGATGGAACAAGAATGGCATCATGAATGCCAAATGTTGTTAC
ACCCAGAACAACCTATAATAGACGAAACTAAATTAACCTTAAGCACCCCACCATCTACATGTCCAAAATGTAAATCTGCT
ATTCACTGGTATCAAAATATTCCTGTAATGAGTTGGTTAATGCTTCGTGGCAAATGTGGTGCTTGCCAAAATCCAATTAG
TATTCGCTATCCACTTATTGAACTATTAACAATGATTTGCTCATTAATAGTAGTTGCTATATTTGGTGCGACCGTACAAA
TGTTATTTGGCTTAATACTCACTTGGGTCTTAATCACATTAACGTTTATTGATTTCGACACACAGCTATTACCCGATCGC
TTTACCTTACCACTTGCCGCACTAGGCTTGGGAATCAATAGTTTCACTATTTATACTTCTGCTGGTTCAGCGATTTGGGG
CTATTTGATTGGCTTTCTATGCTTATGGATTGTTTACTATATCTTTAAACTCGTCACAGGCAAGGAAGGTATGGGCTATG
GTGATTTTAAACTACTTGCAGCTTTAGGTGCTTGGATGGGACCATTGATGCTCCCCCTAATTGTGCTACTCTCTTCAGTT
GTTGGTGCAATTATTGGAATTATTTTGATAAAAATGCGTGGTGAAAACCAACCATTTGCATTTGGTCCTTATATTGCAAT
TGCTGGCTGGATTGCATTTTTATGGGGAAATCAAATTATGAAAATATATCTAGGTGGATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	81.119	100	0.811
pilD	Acinetobacter nosocomialis M2	81.119	100	0.811
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	51.449	96.503	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437