Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACN19N_RS01370 Genome accession   NZ_CP184160
Coordinates   299854..301977 (+) Length   707 a.a.
NCBI ID   WP_420002342.1    Uniprot ID   -
Organism   Acinetobacter sp. LF10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 294854..306977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN19N_RS01350 (ACN19N_01350) comM 296826..297884 (+) 1059 WP_004660139.1 pilus assembly protein PilM Machinery gene
  ACN19N_RS01355 (ACN19N_01355) pilN 297884..298525 (+) 642 WP_269229435.1 PilN domain-containing protein Machinery gene
  ACN19N_RS01360 (ACN19N_01360) comO 298522..299265 (+) 744 WP_269238646.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACN19N_RS01365 (ACN19N_01365) pilP 299265..299792 (+) 528 WP_241306541.1 pilus assembly protein PilP Machinery gene
  ACN19N_RS01370 (ACN19N_01370) pilQ 299854..301977 (+) 2124 WP_420002342.1 type IV pilus secretin PilQ Machinery gene
  ACN19N_RS01375 (ACN19N_01375) aroK 301988..302554 (+) 567 WP_087535970.1 shikimate kinase AroK -
  ACN19N_RS01380 (ACN19N_01380) aroB 302579..303661 (+) 1083 WP_269229438.1 3-dehydroquinate synthase -
  ACN19N_RS01385 (ACN19N_01385) - 303681..304547 (+) 867 WP_269238644.1 hypothetical protein -

Sequence

Protein


Download         Length: 707 a.a.        Molecular weight: 77121.66 Da        Isoelectric Point: 6.7764

>NTDB_id=1108003 ACN19N_RS01370 WP_420002342.1 299854..301977(+) (pilQ) [Acinetobacter sp. LF10]
MNHAFRQFSMGVVAIAIMQAASAQVSMTNIVPMSLADQGTEIRIMFNGLPPQPQAYQLEQPSRLILDFDKTQQNLKQASI
PVSTNEASTIDVAADDQRSRLVVNLKEAGAFTTRVEGNTFILKINAVQPVNAARNATVVRKPQQGVSNIGFQRGAQGEGL
VVVDLLGSNTPVDVQQQGSKIVIRTMGNKIPTHLARRLNTNDFATPVASVDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEDKSSPKAKAQVYTGNKISLDFQDIEVRRVLQLLADFTSINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVSELIKSEEEEAKAIAQSIKLAPIQTEYIKLSYAKAADILKLIEDSRDNKAASSNRTTNSDSLALE
SLLSSRGSAVADTRTNTLIVNDAAVNIDKIRKLIDLLDVSVKQVMIEARIVSASTDFTKEMGVKWGILSQGITSNNDLLV
GGSDTTLWNLRKPTKDSDTGGWKYEIERPDNLNVDLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPKVM
TADKQSAKISSGKRIPYATSSGNDGPKTEFVDAVLSLDVTPSITPEGKVMLKLNITKDSQSNPTPTGQLTINKNEINTNV
LVDNGETVVLGGIFEQENINSQTKVPFLGDLPYLGKFFRNDRKTDTKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2124 bp        

>NTDB_id=1108003 ACN19N_RS01370 WP_420002342.1 299854..301977(+) (pilQ) [Acinetobacter sp. LF10]
ATGAATCATGCATTCCGTCAATTTTCAATGGGTGTAGTGGCTATTGCAATTATGCAAGCTGCATCTGCACAAGTGAGTAT
GACGAATATTGTTCCAATGAGTTTGGCTGATCAAGGTACAGAAATTCGTATCATGTTTAACGGTTTGCCTCCACAGCCAC
AGGCGTATCAACTAGAACAACCTTCTCGATTGATTTTAGATTTTGATAAAACGCAACAAAATTTGAAACAGGCATCAATA
CCAGTTTCAACTAATGAAGCATCAACAATTGATGTTGCAGCTGATGATCAGCGTTCACGTCTGGTTGTTAATTTAAAGGA
AGCAGGAGCTTTTACGACACGCGTTGAAGGGAATACGTTTATTCTTAAAATAAATGCAGTTCAACCAGTAAATGCTGCTC
GTAATGCTACGGTTGTCAGAAAACCACAGCAAGGTGTATCAAATATTGGTTTCCAGCGCGGTGCTCAAGGTGAAGGATTA
GTTGTTGTTGATCTATTGGGTAGTAACACTCCCGTAGATGTGCAGCAACAGGGAAGTAAAATTGTTATTAGAACGATGGG
AAATAAAATTCCAACGCATTTAGCTCGTCGTTTAAATACCAACGATTTTGCTACACCTGTCGCAAGTGTAGATGCTTATA
ATGATAAAGGGAATGGTGTTATCACCATTCAGTCTGCTGGTAGTTATGAGTATATGGCTTACCAAGCGGAAAATAAATTA
ACGATTAGTCTGAAGCGTCCAGAAGATAAGTCTTCTCCGAAAGCTAAAGCCCAGGTCTATACTGGGAATAAAATTTCATT
AGATTTTCAAGATATTGAGGTGCGTCGAGTTCTGCAGCTGTTGGCTGATTTTACCAGTATAAATATGGTTGCAGCTGATA
CTGTACAAGGGAACATTACTTTACGCCTTAAGGATGTACCATGGGATCAAGCTTTAGATATTGTGCTTAAAACAAAGAAT
TTAGATAAACGCCGAAATGGAAACGTAATCTGGATTGCACCAGTTTCTGAACTAATTAAGTCAGAAGAAGAGGAAGCTAA
AGCAATCGCACAAAGCATTAAACTGGCTCCAATTCAAACAGAATATATTAAACTAAGTTATGCAAAAGCTGCGGATATTT
TAAAACTTATAGAGGACTCTCGCGATAATAAAGCGGCGAGTTCAAACCGAACAACTAATTCAGATTCTTTAGCTTTAGAA
AGCTTATTGAGCTCACGCGGGAGTGCTGTCGCAGATACACGTACAAATACTTTAATTGTTAATGATGCTGCCGTAAATAT
AGATAAAATTCGTAAATTAATTGATTTATTAGATGTTTCAGTAAAACAGGTTATGATTGAAGCACGAATTGTGAGTGCGA
GTACTGATTTTACAAAAGAAATGGGTGTTAAGTGGGGTATTTTATCTCAGGGCATTACTAGCAATAACGATTTATTAGTT
GGTGGTAGTGATACTACTTTATGGAACTTAAGAAAGCCTACTAAAGATAGTGACACTGGTGGTTGGAAATATGAGATCGA
ACGCCCGGATAACTTGAATGTAGATTTGGGGGCTGTAACACCTGGTGCAAGCCGGATTGCATTCGGTTTGATTAGTTTAT
CTGATTTTATGTTGGATTTGGAGTTGTCAGCAGTTCAAGCTGATGGCTATGGTGAAGTGATATCTACGCCAAAAGTTATG
ACAGCTGATAAGCAGTCAGCTAAAATTTCATCTGGTAAACGTATCCCTTATGCAACATCTAGTGGGAATGATGGACCAAA
AACTGAATTTGTTGATGCGGTATTGAGTTTAGATGTAACACCTAGTATTACCCCAGAAGGTAAAGTTATGTTGAAGCTGA
ATATTACTAAAGACTCGCAGAGTAACCCTACTCCAACAGGTCAATTGACCATTAATAAAAATGAAATAAATACTAATGTA
TTGGTCGATAATGGTGAAACGGTTGTGTTAGGTGGTATTTTTGAACAAGAAAATATTAACTCGCAAACTAAAGTCCCTTT
TTTAGGCGATTTACCTTATTTGGGTAAGTTTTTCCGAAATGATAGAAAGACTGATACGAAACGCGAATTACTTATTTTTG
TGACACCAAGAATTGTTAATGACACTTTGACGAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(37-121)

Bacterial type II and III secretion system protein (Secretin)

(544-699)

Secretin and TonB N terminus short domain (STN)

(292-334)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.309

100

0.761
  pilQ Acinetobacter baumannii strain A118

74.171

100

0.76
  comQ Acinetobacter baylyi ADP1

70.153

100

0.711
  pilQ Pseudomonas aeruginosa PAK

40.276

100

0.413
  pilQ Legionella pneumophila strain Lp02

36.006

100

0.362

Multiple sequence alignment