Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ACN19N_RS01365 Genome accession   NZ_CP184160
Coordinates   299265..299792 (+) Length   175 a.a.
NCBI ID   WP_241306541.1    Uniprot ID   A0A9E9L4U0
Organism   Acinetobacter sp. LF10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 294265..304792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN19N_RS01350 (ACN19N_01350) comM 296826..297884 (+) 1059 WP_004660139.1 pilus assembly protein PilM Machinery gene
  ACN19N_RS01355 (ACN19N_01355) pilN 297884..298525 (+) 642 WP_269229435.1 PilN domain-containing protein Machinery gene
  ACN19N_RS01360 (ACN19N_01360) comO 298522..299265 (+) 744 WP_269238646.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACN19N_RS01365 (ACN19N_01365) pilP 299265..299792 (+) 528 WP_241306541.1 pilus assembly protein PilP Machinery gene
  ACN19N_RS01370 (ACN19N_01370) pilQ 299854..301977 (+) 2124 WP_420002342.1 type IV pilus secretin PilQ Machinery gene
  ACN19N_RS01375 (ACN19N_01375) aroK 301988..302554 (+) 567 WP_087535970.1 shikimate kinase AroK -
  ACN19N_RS01380 (ACN19N_01380) aroB 302579..303661 (+) 1083 WP_269229438.1 3-dehydroquinate synthase -
  ACN19N_RS01385 (ACN19N_01385) - 303681..304547 (+) 867 WP_269238644.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19259.43 Da        Isoelectric Point: 8.4537

>NTDB_id=1108002 ACN19N_RS01365 WP_241306541.1 299265..299792(+) (pilP) [Acinetobacter sp. LF10]
MTSYKLLCGLLISLVLVGCDSRIDAVNQQMADIRNQQPLPIEPAPVFAPVPLFNYASHQLKSPFMPSSLAAELKIMAGKR
VYPNLNRQSQPLESYALEALNMKGSMRGKQNDTIALIQTPDGQIERVQVGSYLGMNQGRIVKISPTQIDLVEIVPDGREG
YVERPRTLVLIGPVS

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1108002 ACN19N_RS01365 WP_241306541.1 299265..299792(+) (pilP) [Acinetobacter sp. LF10]
ATGACTAGTTATAAATTATTGTGCGGTCTATTGATTAGTCTCGTTTTAGTTGGATGTGATTCTCGTATAGATGCTGTAAA
TCAACAGATGGCTGATATTCGTAATCAACAACCGTTACCTATCGAACCTGCTCCTGTATTTGCTCCAGTACCATTATTTA
ATTACGCATCGCACCAGTTGAAAAGTCCGTTTATGCCAAGTTCATTAGCTGCTGAATTAAAAATTATGGCTGGTAAGCGT
GTTTATCCTAACCTTAACCGGCAGTCACAACCTTTAGAGAGTTATGCTCTTGAGGCCTTGAATATGAAAGGTAGTATGCG
TGGTAAGCAAAATGACACGATCGCCTTGATTCAAACACCAGATGGTCAGATTGAGCGTGTACAGGTTGGTAGTTATTTGG
GTATGAACCAAGGGCGTATTGTAAAAATTAGCCCAACACAAATTGATTTAGTTGAAATTGTGCCAGATGGGCGAGAAGGT
TATGTTGAGAGACCGCGTACGCTCGTTTTAATTGGTCCGGTATCGTGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

80.925

98.857

0.8
  comL Acinetobacter baylyi ADP1

70.52

98.857

0.697

Multiple sequence alignment