Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ACN19N_RS01360 Genome accession   NZ_CP184160
Coordinates   298522..299265 (+) Length   247 a.a.
NCBI ID   WP_269238646.1    Uniprot ID   A0A9E9L2T9
Organism   Acinetobacter sp. LF10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 293522..304265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN19N_RS01345 (ACN19N_01345) ponA 294093..296663 (-) 2571 WP_420001827.1 penicillin-binding protein PBP1a -
  ACN19N_RS01350 (ACN19N_01350) comM 296826..297884 (+) 1059 WP_004660139.1 pilus assembly protein PilM Machinery gene
  ACN19N_RS01355 (ACN19N_01355) pilN 297884..298525 (+) 642 WP_269229435.1 PilN domain-containing protein Machinery gene
  ACN19N_RS01360 (ACN19N_01360) comO 298522..299265 (+) 744 WP_269238646.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACN19N_RS01365 (ACN19N_01365) pilP 299265..299792 (+) 528 WP_241306541.1 pilus assembly protein PilP Machinery gene
  ACN19N_RS01370 (ACN19N_01370) pilQ 299854..301977 (+) 2124 WP_420002342.1 type IV pilus secretin PilQ Machinery gene
  ACN19N_RS01375 (ACN19N_01375) aroK 301988..302554 (+) 567 WP_087535970.1 shikimate kinase AroK -
  ACN19N_RS01380 (ACN19N_01380) aroB 302579..303661 (+) 1083 WP_269229438.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28178.86 Da        Isoelectric Point: 4.5442

>NTDB_id=1108001 ACN19N_RS01360 WP_269238646.1 298522..299265(+) (comO) [Acinetobacter sp. LF10]
MSQEDLNEFDQEIVASKKKKMTLEQFFQQFNTLDMNNYGGWPLSVKITCWIFVFLAVLALGYFVVIRGQLDGIANAQAQE
QSLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEFFIEQP
ISIEATGDYHAFGAFVTGIAALPRIVTLHDFIVEAQQDSQKKSDIPVINYSIKAKTYRYISPEEQVEKESMTQPATTTTP
SVQGGQH

Nucleotide


Download         Length: 744 bp        

>NTDB_id=1108001 ACN19N_RS01360 WP_269238646.1 298522..299265(+) (comO) [Acinetobacter sp. LF10]
ATGAGCCAAGAAGATTTAAACGAATTTGATCAAGAGATTGTTGCTTCGAAAAAGAAAAAAATGACATTAGAGCAATTTTT
TCAACAATTCAATACATTGGATATGAATAATTATGGAGGGTGGCCACTTTCTGTAAAAATTACCTGTTGGATTTTTGTTT
TTTTGGCAGTGCTCGCTCTAGGGTATTTTGTCGTAATTAGAGGTCAACTTGATGGTATTGCAAATGCTCAAGCACAAGAG
CAAAGTTTGTTAAATGAGTTTAGGGAAAAAGACTCTAAATTACGTAATTTGCAACAATATCAAGCCCAATTACAAGAAAT
GGAAGCGAATTTTAATCAGCAACTTGAACAATTGCCGAAAGAAACTGAAATTCCAAGTTTAGTTGAGGATATTAATTTAA
CTGGTGTGAACTCTGGATTAAAGTTTAAAAATATCCGCTTAGAAAATGAAGTAAAGCAAGAGTTTTTTATTGAACAGCCA
ATTAGTATTGAAGCAACTGGTGATTATCATGCGTTTGGTGCTTTTGTAACAGGGATTGCTGCGTTACCTAGGATTGTGAC
ATTGCATGATTTTATCGTTGAGGCGCAGCAAGATTCTCAGAAAAAATCAGATATCCCTGTGATTAATTACTCAATTAAAG
CAAAAACATATCGTTATATTAGTCCTGAAGAGCAAGTTGAGAAAGAATCTATGACTCAACCAGCTACAACGACAACTCCA
TCAGTTCAAGGAGGTCAGCACTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

72.245

99.19

0.717
  pilO Acinetobacter baumannii D1279779

73.64

96.761

0.713

Multiple sequence alignment