Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACN19N_RS01355 Genome accession   NZ_CP184160
Coordinates   297884..298525 (+) Length   213 a.a.
NCBI ID   WP_269229435.1    Uniprot ID   A0A9E9L2E9
Organism   Acinetobacter sp. LF10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 292884..303525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN19N_RS01340 (ACN19N_01340) - 293255..294073 (+) 819 WP_420001826.1 putative RNA methyltransferase -
  ACN19N_RS01345 (ACN19N_01345) ponA 294093..296663 (-) 2571 WP_420001827.1 penicillin-binding protein PBP1a -
  ACN19N_RS01350 (ACN19N_01350) comM 296826..297884 (+) 1059 WP_004660139.1 pilus assembly protein PilM Machinery gene
  ACN19N_RS01355 (ACN19N_01355) pilN 297884..298525 (+) 642 WP_269229435.1 PilN domain-containing protein Machinery gene
  ACN19N_RS01360 (ACN19N_01360) comO 298522..299265 (+) 744 WP_269238646.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACN19N_RS01365 (ACN19N_01365) pilP 299265..299792 (+) 528 WP_241306541.1 pilus assembly protein PilP Machinery gene
  ACN19N_RS01370 (ACN19N_01370) pilQ 299854..301977 (+) 2124 WP_420002342.1 type IV pilus secretin PilQ Machinery gene
  ACN19N_RS01375 (ACN19N_01375) aroK 301988..302554 (+) 567 WP_087535970.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23739.10 Da        Isoelectric Point: 6.0091

>NTDB_id=1108000 ACN19N_RS01355 WP_269229435.1 297884..298525(+) (pilN) [Acinetobacter sp. LF10]
MAKINLLPWRDELREQKKKQFVAFCAGVAALGVVSVFSGWMYFDHKLNDQEQANQLIVSTNQNLDTQLKSLDGLQERRNA
IIERMKLIQGLQGQRPITVRLVDELVRVTPPTMYLTKFTRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
ADDKKDKTASSLVPRVEENYGSFVVTVDLGEIGTTAEADPTLEAVASGSGVVK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1108000 ACN19N_RS01355 WP_269229435.1 297884..298525(+) (pilN) [Acinetobacter sp. LF10]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAACAAAAAAAGAAACAGTTCGTTGCATTTTGTGCTGG
GGTAGCAGCATTAGGCGTAGTATCAGTTTTCTCTGGGTGGATGTACTTTGATCATAAGTTGAATGATCAAGAACAGGCAA
ATCAGCTAATTGTAAGTACTAACCAGAATTTAGATACTCAACTTAAGTCATTAGATGGTTTGCAAGAACGACGTAATGCA
ATCATTGAGCGTATGAAACTAATTCAAGGATTGCAGGGGCAGCGTCCAATTACAGTACGTTTAGTTGATGAGCTAGTACG
AGTAACACCACCTACAATGTATTTGACAAAATTTACCCGTACAGGTGATAAATTTACCATTGAGGGTAAGGCAGAAAGCC
CAAATACCGTTGCTGAGCTTTTAAGAAATCTAGAAGCTTCACCTTGGTATCGTAACGCGTTTATGAATTCTTTTTTAGCG
GCAGATGATAAAAAAGATAAAACAGCAAGCTCTTTAGTTCCTCGAGTTGAAGAAAACTATGGAAGTTTTGTGGTAACTGT
TGATTTGGGAGAAATAGGCACAACAGCTGAGGCTGACCCAACTTTAGAAGCAGTTGCATCAGGATCAGGGGTAGTGAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

76.056

100

0.761
  comN Acinetobacter baylyi ADP1

78.462

91.549

0.718

Multiple sequence alignment