Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACLKM6_RS01270 Genome accession   NZ_CP183890
Coordinates   272823..274052 (-) Length   409 a.a.
NCBI ID   WP_411687056.1    Uniprot ID   -
Organism   Acinetobacter indicus strain D11_NDM_tet(X5)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 267823..279052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM6_RS01245 - 269201..269524 (+) 324 WP_005181767.1 pyrimidine/purine nucleoside phosphorylase -
  ACLKM6_RS01250 rlmB 269630..270382 (+) 753 WP_411687059.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACLKM6_RS01255 - 270400..271320 (+) 921 WP_016659657.1 DMT family transporter -
  ACLKM6_RS01260 coaE 271317..271925 (-) 609 WP_411687058.1 dephospho-CoA kinase -
  ACLKM6_RS01265 pilD 271936..272799 (-) 864 WP_411687057.1 prepilin peptidase Machinery gene
  ACLKM6_RS01270 pilC 272823..274052 (-) 1230 WP_411687056.1 type II secretion system F family protein Machinery gene
  ACLKM6_RS01275 pilB 274083..275789 (-) 1707 WP_104471790.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACLKM6_RS01280 tpiA 276078..276869 (+) 792 WP_005181780.1 triose-phosphate isomerase -
  ACLKM6_RS01285 secG 276883..277212 (+) 330 WP_005181783.1 preprotein translocase subunit SecG -
  ACLKM6_RS01310 rimP 278081..278596 (+) 516 WP_411687055.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44953.40 Da        Isoelectric Point: 9.9764

>NTDB_id=1106879 ACLKM6_RS01270 WP_411687056.1 272823..274052(-) (pilC) [Acinetobacter indicus strain D11_NDM_tet(X5)]
MAVKKAQMMPTFIYEGIDRKGAKLKGELPARNMALAKVTLRKQGITIKTIRQKKKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFEELFSSFGADLPAFTKMVVNMSQWTQKYWFVLIIVVGFAIA
AFLEAKKRSKKFRDLLDKAALRAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIRDDVA
TGQQLQFAMRVTNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMSILGVLVGGLVIAMYLP
IFQMGSVVG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1106879 ACLKM6_RS01270 WP_411687056.1 272823..274052(-) (pilC) [Acinetobacter indicus strain D11_NDM_tet(X5)]
ATGGCTGTCAAAAAAGCACAGATGATGCCCACCTTTATTTATGAAGGGATTGACCGCAAAGGGGCAAAACTTAAAGGGGA
ACTGCCAGCACGTAATATGGCGCTGGCCAAGGTCACGTTGCGCAAGCAAGGGATCACCATCAAAACCATCCGCCAGAAGA
AGAAAAATATTCTCGAAGGCTTGATGAAGAAGAAAGTCTCGACCCTGGACATTACGATTTTTACCCGTCAGCTGGCGACT
ATGATGAAAGCTGGTGTACCGCTGGTGCAGAGCTTTGAAATTGTGGCTGAAGGTCTGGAAAACCCGGCCATGCGTGAAGT
GGTATTGGGGATTAAAGGCGAAGTCGAAGGGGGCAATACCTTTGCTGGTGCACTGCGTAAATATCCGCAACATTTCGATA
ATCTGTTTTGCTCGCTGGTTGAATCGGGTGAACAGTCGGGTGCTCTAGAAACTATGCTGGACCGGGTAGCGATCTATAAA
GAAAAGAGCGAATTACTCAAACAGAAAATCAAGAAAGCCATGAAATACCCGGCAACGGTGATTGTGGTGGCAGTGATTGT
CACCATTATCCTGATGGTCAAAGTGGTACCGGTGTTTGAAGAACTCTTCAGCTCTTTTGGTGCCGACTTACCAGCCTTCA
CCAAAATGGTGGTGAATATGTCGCAGTGGACCCAGAAATACTGGTTTGTGCTGATTATTGTGGTCGGCTTTGCGATTGCA
GCTTTTCTGGAAGCCAAGAAACGCAGCAAGAAATTCCGTGACCTGCTGGACAAAGCCGCCCTGAGAGCACCAATTTTTGG
TGATCTGGTGTATAAGGCGATTATTGCACGTTATAGCCGTACTTTAGCCACTACTTTTGCTGCTGGTGTACCCTTAATTG
ATGCCTTGGAATCTACCGCTGGGGCAACCAATAATGTGGTCTATGAAGAAGCCGTGATGAAAATTCGTGATGATGTTGCG
ACAGGTCAACAGCTACAATTCGCCATGCGTGTCACCAATAAATTCCCGTCTATGGCAGTGCAAATGGTTGCGATTGGTGA
AGAATCAGGTGCGCTAGATGCCATGCTGGATAAAGTCGCAACCCACTATGAAAACGAAGTCGACAACGCAGTAGATGGCT
TAACCTCAATGATGGAGCCGTTGATTATGTCAATCTTAGGGGTTTTAGTTGGCGGTTTAGTTATTGCTATGTACCTACCT
ATTTTCCAAATGGGTTCAGTTGTTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.971

99.756

0.888
  pilC Acinetobacter baylyi ADP1

83.824

99.756

0.836
  pilC Pseudomonas stutzeri DSM 10701

60.688

99.511

0.604
  pilC Legionella pneumophila strain ERS1305867

52.346

99.022

0.518
  pilG Neisseria gonorrhoeae MS11

47.99

97.311

0.467
  pilG Neisseria meningitidis 44/76-A

47.99

97.311

0.467
  pilC Vibrio cholerae strain A1552

43.032

100

0.43
  pilC Vibrio campbellii strain DS40M4

42.963

99.022

0.425

Multiple sequence alignment