Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACLKM6_RS01265 Genome accession   NZ_CP183890
Coordinates   271936..272799 (-) Length   287 a.a.
NCBI ID   WP_411687057.1    Uniprot ID   -
Organism   Acinetobacter indicus strain D11_NDM_tet(X5)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 266936..277799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM6_RS01245 - 269201..269524 (+) 324 WP_005181767.1 pyrimidine/purine nucleoside phosphorylase -
  ACLKM6_RS01250 rlmB 269630..270382 (+) 753 WP_411687059.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACLKM6_RS01255 - 270400..271320 (+) 921 WP_016659657.1 DMT family transporter -
  ACLKM6_RS01260 coaE 271317..271925 (-) 609 WP_411687058.1 dephospho-CoA kinase -
  ACLKM6_RS01265 pilD 271936..272799 (-) 864 WP_411687057.1 prepilin peptidase Machinery gene
  ACLKM6_RS01270 pilC 272823..274052 (-) 1230 WP_411687056.1 type II secretion system F family protein Machinery gene
  ACLKM6_RS01275 pilB 274083..275789 (-) 1707 WP_104471790.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACLKM6_RS01280 tpiA 276078..276869 (+) 792 WP_005181780.1 triose-phosphate isomerase -
  ACLKM6_RS01285 secG 276883..277212 (+) 330 WP_005181783.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31963.30 Da        Isoelectric Point: 7.8046

>NTDB_id=1106878 ACLKM6_RS01265 WP_411687057.1 271936..272799(-) (pilD) [Acinetobacter indicus strain D11_NDM_tet(X5)]
MLTELIAYLIQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRNDCQMLLHPEQAIIDESKISLSQPASTCPKCHS
PIRWYQNIPVISWLLLRGKCGQCQNPISIRYPFIELLTAVCALTIVAVFGPTLQMLFGLVLTYVLIALTFIDFDTQLLPD
RYTLPLAALGLGVNSYALYTSASSAIWGYIIGFLCLWVVYYLFKLVTGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSS
LVGAIIGIILLKIRKENQPFAFGPYIAIAGWIAFLWGDAIMKLYLGQ

Nucleotide


Download         Length: 864 bp        

>NTDB_id=1106878 ACLKM6_RS01265 WP_411687057.1 271936..272799(-) (pilD) [Acinetobacter indicus strain D11_NDM_tet(X5)]
TTGCTTACAGAATTAATCGCGTACTTGATCCAAAATCCAACTGCGCTCTATATCGCAGTTGGACTTTTTAGTTTATGTAT
TGGCAGTTTTTTGAATGTGGTGATTTATCGCACCCCAAAAATGATGGAACAGGAGTGGCGCAATGACTGTCAAATGCTGC
TGCATCCTGAACAGGCCATCATTGATGAAAGCAAAATCAGCCTCAGTCAGCCAGCCTCGACCTGTCCGAAATGCCACAGC
CCGATTCGCTGGTATCAGAATATTCCAGTAATCAGCTGGCTGCTTCTACGTGGCAAATGTGGCCAATGCCAAAACCCGAT
CAGTATTCGTTATCCTTTTATTGAACTGCTGACCGCAGTGTGTGCCTTAACCATAGTCGCGGTTTTTGGCCCGACCCTGC
AAATGCTGTTTGGCCTGGTGTTGACCTATGTGTTAATTGCCCTGACCTTTATTGATTTTGACACCCAGCTGCTGCCTGAC
CGCTATACCCTCCCCCTGGCTGCACTCGGCTTGGGGGTGAACAGCTATGCCCTGTACACCTCCGCTAGCTCTGCCATTTG
GGGATATATCATTGGCTTTTTATGTCTGTGGGTGGTGTATTACCTGTTTAAGCTGGTGACTGGCAAAGAAGGTATGGGCT
ATGGCGATTTTAAATTGCTGGCCGCCTTAGGTGCCTGGATGGGCCCGCTGATGCTGCCGCTGATTGTGTTGCTATCTTCT
CTGGTTGGTGCAATCATTGGCATTATTTTGCTGAAAATCCGCAAAGAGAACCAGCCTTTTGCCTTTGGCCCTTATATTGC
CATTGCCGGCTGGATCGCCTTTTTGTGGGGTGATGCAATCATGAAGCTTTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(139-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

80.702

99.303

0.801
  pilD Acinetobacter baumannii D1279779

80.351

99.303

0.798
  pilD Vibrio cholerae strain A1552

55.97

93.38

0.523
  pilD Vibrio campbellii strain DS40M4

51.812

96.167

0.498
  pilD Neisseria gonorrhoeae MS11

46.52

95.122

0.443

Multiple sequence alignment