Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACGHCW_RS16075 Genome accession   NZ_AP031614
Coordinates   3477448..3478557 (-) Length   369 a.a.
NCBI ID   WP_390502105.1    Uniprot ID   -
Organism   Vibrio harveyi strain TUMSAT-2019     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3472448..3483557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHCW_RS16045 (VHTUMSATKI_30640) hemF 3472977..3473894 (-) 918 WP_390502104.1 oxygen-dependent coproporphyrinogen oxidase -
  ACGHCW_RS16050 (VHTUMSATKI_30650) - 3473929..3474486 (-) 558 WP_017190968.1 L-threonylcarbamoyladenylate synthase -
  ACGHCW_RS16055 (VHTUMSATKI_30660) purE 3474686..3475171 (+) 486 WP_005440742.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  ACGHCW_RS16060 (VHTUMSATKI_30670) - 3475176..3476309 (+) 1134 WP_053048950.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  ACGHCW_RS16065 - 3476373..3476942 (-) 570 WP_050907909.1 type I DNA topoisomerase -
  ACGHCW_RS16070 (VHTUMSATKI_30680) - 3476966..3477445 (-) 480 WP_005429833.1 DUF494 family protein -
  ACGHCW_RS16075 (VHTUMSATKI_30690) dprA 3477448..3478557 (-) 1110 WP_390502105.1 DNA-processing protein DprA Machinery gene
  ACGHCW_RS16080 (VHTUMSATKI_30700) - 3478541..3479635 (-) 1095 WP_005450978.1 LysM peptidoglycan-binding domain-containing protein -
  ACGHCW_RS16085 (VHTUMSATKI_30710) def 3479774..3480292 (+) 519 WP_050937889.1 peptide deformylase -
  ACGHCW_RS16090 (VHTUMSATKI_30720) fmt 3480326..3481273 (+) 948 WP_390502106.1 methionyl-tRNA formyltransferase -
  ACGHCW_RS16095 (VHTUMSATKI_30730) rsmB 3481355..3482638 (+) 1284 WP_005450981.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39737.41 Da        Isoelectric Point: 6.0403

>NTDB_id=110685 ACGHCW_RS16075 WP_390502105.1 3477448..3478557(-) (dprA) [Vibrio harveyi strain TUMSAT-2019]
MKLRNDTDLAAWLKLSCLPGIGGVKMNKLLSKDTPSNIVGYSTEQLQLLGFTTKQLQAWSEVDKEVDACLTWASASSHHH
IVTLADTLYPPLLKQTVAPPPLLFIKGDASCLSQPQIAMVGSRNASVDGLQHARQFAADLVKHDLIVTSGLALGIDGHAH
DGALQADGKTIAVLGSGLEQVYPARHRGLARRVMENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQDREVFAIPASINAPNASGGNQLIRNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSTPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=110685 ACGHCW_RS16075 WP_390502105.1 3477448..3478557(-) (dprA) [Vibrio harveyi strain TUMSAT-2019]
ATGAAACTACGCAATGATACTGACCTCGCCGCCTGGTTAAAGCTGAGCTGCTTGCCAGGCATTGGCGGGGTGAAGATGAA
TAAGCTGCTGAGTAAAGATACGCCAAGCAATATTGTCGGATACTCAACTGAGCAGCTTCAGCTTTTGGGTTTTACCACGA
AGCAACTGCAAGCATGGTCTGAGGTCGATAAAGAAGTCGACGCTTGTCTTACTTGGGCTAGCGCCTCATCTCATCATCAT
ATTGTTACTTTGGCGGATACTCTGTATCCCCCACTTCTCAAACAAACGGTCGCTCCACCTCCTTTACTATTTATAAAGGG
AGATGCGAGTTGTTTGTCTCAACCTCAAATTGCCATGGTCGGCAGCCGTAATGCTAGTGTTGATGGGCTTCAACACGCAC
GTCAGTTCGCTGCAGATTTGGTGAAACATGATCTGATTGTTACCAGTGGTTTGGCTTTGGGTATCGATGGACACGCTCAT
GATGGTGCTTTGCAAGCGGACGGTAAAACCATTGCGGTATTGGGTTCAGGGTTAGAGCAAGTTTATCCAGCCCGTCACCG
AGGTTTAGCGCGGCGAGTGATGGAAAACGGTGCGTTAGTCTCTGAGTTTCGCCCAGATGCAAAACCTCGAGCAGAAAACT
TCCCACGACGTAATCGAATCATTAGTGGTTTGTCGCTTGGCGTGTTGGTTGTCGAAGCAGCAGAAAAGAGTGGCTCATTA
ATCACCGCTCGCTACGCTCTTGAGCAAGACCGTGAAGTTTTCGCTATACCAGCTTCGATTAATGCTCCCAATGCCAGTGG
TGGTAATCAGTTGATTCGTAATGGGGCTTGTCTCGTACAAAACACTCAAGAGGTGTTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTGGATTTATTTTCTACGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(314-362)

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

92.683

100

0.927
  dprA Vibrio cholerae strain A1552

58.649

100

0.588
  dprA Glaesserella parasuis strain SC1401

46.933

100

0.477
  dprA Haemophilus influenzae Rd KW20

44.706

92.141

0.412
  dprA Legionella pneumophila strain ERS1305867

48.986

80.217

0.393
  dprA Neisseria meningitidis strain C311

36.829

100

0.39
  dprA Neisseria meningitidis MC58

36.829

100

0.39
  dprA Neisseria gonorrhoeae MS11

35.659

100

0.374
  dprA Neisseria gonorrhoeae strain FA1090

35.401

100

0.371

Multiple sequence alignment