Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACN6M2_RS17130 Genome accession   NZ_CP183838
Coordinates   3423154..3424398 (-) Length   414 a.a.
NCBI ID   WP_419877043.1    Uniprot ID   -
Organism   Brevibacillus centrosporus strain L3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3418154..3429398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6M2_RS17115 (ACN6M2_17115) - 3419578..3420219 (-) 642 WP_411501709.1 RecX family transcriptional regulator -
  ACN6M2_RS17120 (ACN6M2_17120) recA 3420327..3421385 (-) 1059 WP_092266736.1 recombinase RecA Machinery gene
  ACN6M2_RS17125 (ACN6M2_17125) - 3421557..3423146 (-) 1590 WP_092266735.1 DEAD/DEAH box helicase -
  ACN6M2_RS17130 (ACN6M2_17130) cinA 3423154..3424398 (-) 1245 WP_419877043.1 competence/damage-inducible protein A Machinery gene
  ACN6M2_RS17135 (ACN6M2_17135) pgsA 3424506..3425081 (-) 576 WP_092266733.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACN6M2_RS17140 (ACN6M2_17140) rimO 3425082..3426428 (-) 1347 WP_411501711.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ACN6M2_RS17145 (ACN6M2_17145) - 3426540..3427439 (-) 900 WP_092266731.1 helix-turn-helix domain-containing protein -
  ACN6M2_RS17150 (ACN6M2_17150) - 3427452..3428231 (-) 780 WP_092266730.1 YmfK family protein -
  ACN6M2_RS17155 (ACN6M2_17155) - 3428338..3428607 (-) 270 WP_092266729.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44797.25 Da        Isoelectric Point: 4.9947

>NTDB_id=1106389 ACN6M2_RS17130 WP_419877043.1 3423154..3424398(-) (cinA) [Brevibacillus centrosporus strain L3]
MRAEIIAVGTELLLGQIANTNAQFLSQKLAQIGVGVYFHTVVGDNSERLQQVIRLAAERSDLVIFSGGLGPTQDDLTKET
VAAYVGVDLVTDAKAMKYIEDFFTQRGIVMTENNRKQALVLAGSHVLPNDFGMAPGMAIRHDSTTFVLLPGPPSELYPMV
DRYVMPYLIDLLPEKQVFHSRVFRFYGIGESALEERLLDLIEKQDNPTIAPYAKEFEVTLRVTARAATAEAGEALILPVE
KEIRDRVGQYIYGTGEDSSLHEVLVNELRKRGESIACAESCTGGTVASLITSVPGSSSVFHGGIVCYTNEVKNQVLGVSE
EVLATEGAVSEQTAKLLAENVREKLGTTYGVSVTGVAGPDSSEGKPVGLVYVGIAAEGLPTVVKELRLAGRRQAIVGRAA
KFALFYALQMQKER

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=1106389 ACN6M2_RS17130 WP_419877043.1 3423154..3424398(-) (cinA) [Brevibacillus centrosporus strain L3]
ATGAGAGCGGAGATTATCGCGGTAGGGACGGAGCTGCTTCTAGGGCAAATCGCCAACACAAACGCACAGTTTCTTTCTCA
AAAGCTGGCGCAGATTGGTGTCGGAGTCTATTTTCATACGGTAGTGGGAGATAATTCGGAGCGGCTGCAGCAAGTTATTC
GCCTGGCAGCAGAACGCTCCGATCTGGTTATCTTCTCTGGAGGGCTTGGACCGACACAGGACGATCTGACCAAAGAGACA
GTAGCTGCATACGTTGGTGTAGATTTGGTTACGGATGCAAAAGCCATGAAGTATATCGAGGATTTCTTTACACAACGTGG
CATTGTCATGACGGAGAACAACCGAAAGCAGGCTCTCGTTTTGGCTGGGAGCCATGTCCTTCCCAACGATTTCGGAATGG
CACCGGGTATGGCGATCCGTCATGACAGTACTACGTTCGTATTGCTTCCTGGTCCGCCAAGCGAATTGTATCCGATGGTT
GATCGCTATGTAATGCCCTATCTGATCGATTTGCTGCCTGAAAAACAGGTGTTTCACTCGCGCGTATTCCGTTTTTACGG
GATTGGGGAATCAGCTTTGGAAGAACGCCTGCTGGACTTGATTGAAAAGCAGGACAACCCGACCATCGCTCCGTATGCCA
AGGAGTTTGAAGTGACTCTGCGCGTTACAGCGAGAGCGGCGACAGCTGAAGCAGGGGAAGCGCTCATATTGCCTGTTGAA
AAAGAGATCAGGGATCGTGTGGGACAGTACATTTACGGCACGGGGGAGGATTCCTCCCTGCATGAGGTGCTGGTAAATGA
ACTTAGGAAAAGAGGGGAGAGCATTGCTTGTGCGGAAAGCTGCACAGGTGGTACCGTTGCTTCTTTGATTACCTCTGTTC
CGGGGAGTTCCTCTGTCTTTCACGGTGGGATTGTCTGCTACACCAACGAAGTGAAGAATCAAGTGCTTGGAGTATCAGAA
GAAGTGCTGGCAACAGAGGGAGCCGTCAGCGAACAAACGGCGAAGCTGCTGGCAGAAAATGTACGTGAAAAGCTGGGAAC
CACTTATGGGGTCTCGGTAACGGGCGTAGCTGGTCCGGATTCCTCGGAAGGAAAGCCTGTCGGGCTGGTCTACGTAGGAA
TTGCGGCGGAAGGCTTGCCTACGGTGGTGAAAGAGCTGCGACTGGCGGGAAGAAGGCAGGCTATCGTTGGCCGCGCTGCC
AAATTCGCGCTGTTCTACGCGCTTCAAATGCAAAAAGAAAGGTGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.574

99.758

0.514
  cinA Streptococcus mitis SK321

46.489

99.758

0.464
  cinA Streptococcus mitis NCTC 12261

46.489

99.758

0.464
  cinA Streptococcus pneumoniae TIGR4

46.489

99.758

0.464
  cinA Streptococcus pneumoniae Rx1

46.005

99.758

0.459
  cinA Streptococcus pneumoniae R6

46.005

99.758

0.459
  cinA Streptococcus pneumoniae D39

45.763

99.758

0.457
  cinA Streptococcus mutans UA159

45.363

96.377

0.437
  cinA Streptococcus suis isolate S10

41.013

95.411

0.391

Multiple sequence alignment