Detailed information NTG1105156

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ACN0NO_RS14830
• Genome accession: NZ_CP183298
• Coordinates: 3231224..3232480 (+)
• Length: 418 a.a.
• NCBI ID: WP_419403265.1
• Uniprot ID: -
• Organism: Stenotrophomonas rhizophila strain SJ-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3210350..3239910	3231224..3232480	within	0

Gene organization within MGE regions

Location: 3210350..3239910

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN0NO_RS14770 (ACN0NO_14770)	-	3210350..3210898 (+)	549	WP_419403255.1	SymE family type I addiction module toxin	-
ACN0NO_RS14775 (ACN0NO_14775)	-	3211022..3211504 (-)	483	WP_419403256.1	hypothetical protein	-
ACN0NO_RS14780 (ACN0NO_14780)	-	3211712..3212074 (-)	363	WP_419403257.1	hypothetical protein	-
ACN0NO_RS14785 (ACN0NO_14785)	-	3212270..3212962 (-)	693	WP_419403258.1	hypothetical protein	-
ACN0NO_RS14790 (ACN0NO_14790)	-	3213664..3213843 (-)	180	WP_419403259.1	hypothetical protein	-
ACN0NO_RS14795 (ACN0NO_14795)	-	3214162..3219000 (-)	4839	WP_419403260.1	RHS repeat-associated core domain-containing protein	-
ACN0NO_RS14800 (ACN0NO_14800)	-	3219401..3219844 (-)	444	WP_419403261.1	hypothetical protein	-
ACN0NO_RS14805 (ACN0NO_14805)	-	3219867..3224531 (-)	4665	WP_419403262.1	RHS repeat-associated core domain-containing protein	-
ACN0NO_RS14810 (ACN0NO_14810)	-	3224849..3227896 (-)	3048	WP_419403263.1	spermine synthase	-
ACN0NO_RS14815 (ACN0NO_14815)	pilB	3228172..3229899 (-)	1728	WP_095363637.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACN0NO_RS14820 (ACN0NO_14820)	pilA	3229953..3230360 (-)	408	WP_419403264.1	pilin	Machinery gene
ACN0NO_RS14825 (ACN0NO_14825)	pilA	3230460..3230867 (-)	408	WP_095363635.1	pilin	Machinery gene
ACN0NO_RS14830 (ACN0NO_14830)	pilC	3231224..3232480 (+)	1257	WP_419403265.1	type II secretion system F family protein	Machinery gene
ACN0NO_RS14835 (ACN0NO_14835)	pilD	3232487..3233350 (+)	864	WP_068853817.1	prepilin peptidase	Machinery gene
ACN0NO_RS14840 (ACN0NO_14840)	coaE	3233358..3233966 (+)	609	WP_419403266.1	dephospho-CoA kinase	-
ACN0NO_RS14845 (ACN0NO_14845)	-	3234056..3235420 (-)	1365	WP_095363631.1	sensor histidine kinase	-
ACN0NO_RS14850 (ACN0NO_14850)	-	3235383..3236060 (-)	678	WP_017356179.1	response regulator transcription factor	-
ACN0NO_RS14855 (ACN0NO_14855)	-	3236068..3236538 (-)	471	WP_095363630.1	hypothetical protein	-
ACN0NO_RS14860 (ACN0NO_14860)	rimK	3236771..3237676 (-)	906	WP_249833010.1	30S ribosomal protein S6--L-glutamate ligase	-
ACN0NO_RS14865 (ACN0NO_14865)	-	3237895..3238674 (+)	780	WP_095363628.1	histidine phosphatase family protein	-
ACN0NO_RS14870 (ACN0NO_14870)	-	3238676..3239548 (+)	873	WP_093533699.1	NAD(P)H-hydrate dehydratase	-
ACN0NO_RS14875 (ACN0NO_14875)	-	3239551..3239910 (-)	360	WP_210130949.1	nuclear transport factor 2 family protein	-

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 45748.22 Da
• Isoelectric Point: 10.1525

>NTDB_id=1105156 ACN0NO_RS14830 WP_419403265.1 3231224..3232480(+) (pilC) [Stenotrophomonas rhizophila strain SJ-3]
MSVSRSAVKKEPVARSTMELQPFVWEGTDKRGVKMKGEQPAKNANMLRAELRRQGITPNVVKPKSKPLFGAAGSAISPKD
IAFFSRQMATMMKSGVPIVGALDIIGSGHKNPRMKKMVDTIRTDIEGGSSLYEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLETVANYKENIEALKGKIKKALFYPIMVMAVALLVSGILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWL
ILIVTIGAVVGFIAAYKRSPRMQHTMDRLILKVPVIGQLMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQINLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPIVMVVIGTIV
GGMVIGMYLPIFKLASVV

Nucleotide

• Length: 1257 bp

>NTDB_id=1105156 ACN0NO_RS14830 WP_419403265.1 3231224..3232480(+) (pilC) [Stenotrophomonas rhizophila strain SJ-3]
ATGTCTGTGAGCCGTAGTGCTGTCAAGAAAGAGCCCGTGGCGCGTAGCACCATGGAGTTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCCCGCCAAGAATGCCAACATGCTGCGCGCCGAGCTGCGCCGGC
AAGGTATTACGCCCAACGTCGTCAAGCCAAAGTCCAAGCCTTTGTTCGGCGCGGCAGGCAGCGCGATCAGTCCGAAGGAT
ATCGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCAGGCGTGCCTATCGTGGGCGCGCTCGACATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGACACCATCCGGACCGACATCGAGGGCGGTTCCTCCCTCTATGAAG
CCATCAGCAAGCACCCGGTCCAGTTCGATGAGCTGTATCGCAATCTTGTAAGGGCGGGCGAAGGCGCCGGTGTGCTGGAA
ACGGTTCTTGAAACCGTTGCCAACTATAAAGAGAACATCGAGGCATTGAAGGGCAAGATCAAGAAAGCCCTCTTCTACCC
GATCATGGTGATGGCGGTGGCCCTGCTGGTCAGCGGAATTCTTCTGGTATGGGTGGTGCCGCAGTTCGAAGACGTCTTCA
AGGGCTTTGGAGCGGAGCTGCCAGCCTTCACTCAGATGATCGTGAACCTTTCCCGGTTCATGGTGTCCTGGTGGTGGCTG
ATCCTGATCGTCACGATCGGCGCGGTAGTTGGATTCATTGCCGCGTACAAGCGATCCCCCAGGATGCAGCACACCATGGA
TCGCCTGATCCTCAAGGTACCGGTCATTGGTCAGCTGATGCACAACAGCGCCATTGCCCGCTTCGCCCGCACCACGGCCG
TGACCTTCAAGGCCGGTGTGCCGCTGGTGGAAGCCTTGGGCATCGTGGCCGGTGCTACGGGCAACAAGGTCTATGAAGAA
GCGGTGCTGCGAATGCGCGACGACGTTTCGGTCGGTTATCCCGTCAACATGGCGATGAAGCAGATAAACCTGTTCCCGCA
CATGGTCATCCAGATGACGGCAATTGGTGAAGAGGCCGGCGCCCTGGATGCCATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAACGCGGTGGATGCGCTGAGCAGCCTGCTGGAGCCGATTGTCATGGTGGTTATTGGTACTATCGTC
GGTGGCATGGTCATCGGCATGTACCTGCCCATCTTCAAACTAGCATCGGTGGTCTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	53.383	95.455	0.51
pilC	Pseudomonas stutzeri DSM 10701	53.03	94.737	0.502
pilC	Acinetobacter baylyi ADP1	50	97.129	0.486
pilC	Acinetobacter baumannii D1279779	49.622	94.976	0.471
pilG	Neisseria gonorrhoeae MS11	43	95.694	0.411
pilG	Neisseria meningitidis 44/76-A	42.5	95.694	0.407
pilC	Vibrio cholerae strain A1552	41.235	96.89	0.4
pilC	Vibrio campbellii strain DS40M4	39.5	95.694	0.378