Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACN0NO_RS14830 Genome accession   NZ_CP183298
Coordinates   3231224..3232480 (+) Length   418 a.a.
NCBI ID   WP_419403265.1    Uniprot ID   -
Organism   Stenotrophomonas rhizophila strain SJ-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3226224..3237480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN0NO_RS14815 (ACN0NO_14815) pilB 3228172..3229899 (-) 1728 WP_095363637.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACN0NO_RS14820 (ACN0NO_14820) pilA 3229953..3230360 (-) 408 WP_419403264.1 pilin Machinery gene
  ACN0NO_RS14825 (ACN0NO_14825) pilA 3230460..3230867 (-) 408 WP_095363635.1 pilin Machinery gene
  ACN0NO_RS14830 (ACN0NO_14830) pilC 3231224..3232480 (+) 1257 WP_419403265.1 type II secretion system F family protein Machinery gene
  ACN0NO_RS14835 (ACN0NO_14835) pilD 3232487..3233350 (+) 864 WP_068853817.1 prepilin peptidase Machinery gene
  ACN0NO_RS14840 (ACN0NO_14840) coaE 3233358..3233966 (+) 609 WP_419403266.1 dephospho-CoA kinase -
  ACN0NO_RS14845 (ACN0NO_14845) - 3234056..3235420 (-) 1365 WP_095363631.1 sensor histidine kinase -
  ACN0NO_RS14850 (ACN0NO_14850) - 3235383..3236060 (-) 678 WP_017356179.1 response regulator transcription factor -
  ACN0NO_RS14855 (ACN0NO_14855) - 3236068..3236538 (-) 471 WP_095363630.1 hypothetical protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45748.22 Da        Isoelectric Point: 10.1525

>NTDB_id=1105156 ACN0NO_RS14830 WP_419403265.1 3231224..3232480(+) (pilC) [Stenotrophomonas rhizophila strain SJ-3]
MSVSRSAVKKEPVARSTMELQPFVWEGTDKRGVKMKGEQPAKNANMLRAELRRQGITPNVVKPKSKPLFGAAGSAISPKD
IAFFSRQMATMMKSGVPIVGALDIIGSGHKNPRMKKMVDTIRTDIEGGSSLYEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLETVANYKENIEALKGKIKKALFYPIMVMAVALLVSGILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWL
ILIVTIGAVVGFIAAYKRSPRMQHTMDRLILKVPVIGQLMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQINLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPIVMVVIGTIV
GGMVIGMYLPIFKLASVV

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1105156 ACN0NO_RS14830 WP_419403265.1 3231224..3232480(+) (pilC) [Stenotrophomonas rhizophila strain SJ-3]
ATGTCTGTGAGCCGTAGTGCTGTCAAGAAAGAGCCCGTGGCGCGTAGCACCATGGAGTTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCCCGCCAAGAATGCCAACATGCTGCGCGCCGAGCTGCGCCGGC
AAGGTATTACGCCCAACGTCGTCAAGCCAAAGTCCAAGCCTTTGTTCGGCGCGGCAGGCAGCGCGATCAGTCCGAAGGAT
ATCGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCAGGCGTGCCTATCGTGGGCGCGCTCGACATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGACACCATCCGGACCGACATCGAGGGCGGTTCCTCCCTCTATGAAG
CCATCAGCAAGCACCCGGTCCAGTTCGATGAGCTGTATCGCAATCTTGTAAGGGCGGGCGAAGGCGCCGGTGTGCTGGAA
ACGGTTCTTGAAACCGTTGCCAACTATAAAGAGAACATCGAGGCATTGAAGGGCAAGATCAAGAAAGCCCTCTTCTACCC
GATCATGGTGATGGCGGTGGCCCTGCTGGTCAGCGGAATTCTTCTGGTATGGGTGGTGCCGCAGTTCGAAGACGTCTTCA
AGGGCTTTGGAGCGGAGCTGCCAGCCTTCACTCAGATGATCGTGAACCTTTCCCGGTTCATGGTGTCCTGGTGGTGGCTG
ATCCTGATCGTCACGATCGGCGCGGTAGTTGGATTCATTGCCGCGTACAAGCGATCCCCCAGGATGCAGCACACCATGGA
TCGCCTGATCCTCAAGGTACCGGTCATTGGTCAGCTGATGCACAACAGCGCCATTGCCCGCTTCGCCCGCACCACGGCCG
TGACCTTCAAGGCCGGTGTGCCGCTGGTGGAAGCCTTGGGCATCGTGGCCGGTGCTACGGGCAACAAGGTCTATGAAGAA
GCGGTGCTGCGAATGCGCGACGACGTTTCGGTCGGTTATCCCGTCAACATGGCGATGAAGCAGATAAACCTGTTCCCGCA
CATGGTCATCCAGATGACGGCAATTGGTGAAGAGGCCGGCGCCCTGGATGCCATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAACGCGGTGGATGCGCTGAGCAGCCTGCTGGAGCCGATTGTCATGGTGGTTATTGGTACTATCGTC
GGTGGCATGGTCATCGGCATGTACCTGCCCATCTTCAAACTAGCATCGGTGGTCTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.383

95.455

0.51
  pilC Pseudomonas stutzeri DSM 10701

53.03

94.737

0.502
  pilC Acinetobacter baylyi ADP1

50

97.129

0.486
  pilC Acinetobacter baumannii D1279779

49.622

94.976

0.471
  pilG Neisseria gonorrhoeae MS11

43

95.694

0.411
  pilG Neisseria meningitidis 44/76-A

42.5

95.694

0.407
  pilC Vibrio cholerae strain A1552

41.235

96.89

0.4
  pilC Vibrio campbellii strain DS40M4

39.5

95.694

0.378

Multiple sequence alignment