Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACN08S_RS18995 Genome accession   NZ_CP183265
Coordinates   1562642..1563865 (+) Length   407 a.a.
NCBI ID   WP_419208947.1    Uniprot ID   -
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sr2.36     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1557642..1568865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08S_RS18970 (ACN08S_19005) nadC 1557748..1558635 (+) 888 WP_419209682.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACN08S_RS18975 (ACN08S_19010) - 1558983..1559060 (+) 78 Protein_1438 type IV pilin protein -
  ACN08S_RS18980 (ACN08S_19015) - 1559171..1560487 (+) 1317 WP_419208245.1 ISNCY family transposase -
  ACN08S_RS18985 (ACN08S_19020) - 1560510..1560908 (+) 399 WP_419208945.1 pilin -
  ACN08S_RS18990 (ACN08S_19025) pilB 1560912..1562597 (+) 1686 WP_419208946.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACN08S_RS18995 (ACN08S_19030) pilC 1562642..1563865 (+) 1224 WP_419208947.1 type II secretion system F family protein Machinery gene
  ACN08S_RS19000 (ACN08S_19035) pilD 1563954..1564823 (+) 870 WP_419208948.1 prepilin peptidase Machinery gene
  ACN08S_RS19005 (ACN08S_19040) coaE 1564827..1565432 (+) 606 WP_419208949.1 dephospho-CoA kinase -
  ACN08S_RS19010 (ACN08S_19045) zapD 1565497..1566243 (+) 747 WP_419208950.1 cell division protein ZapD -
  ACN08S_RS19015 (ACN08S_19050) yacG 1566251..1566472 (+) 222 WP_318469651.1 DNA gyrase inhibitor YacG -
  ACN08S_RS19020 (ACN08S_19055) mutT 1566477..1566881 (+) 405 WP_419208951.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45229.33 Da        Isoelectric Point: 9.5748

>NTDB_id=1104926 ACN08S_RS18995 WP_419208947.1 1562642..1563865(+) (pilC) [Photobacterium leiognathi subsp. mandapamensis strain Sr2.36]
MSTATTKIRYYNWRGTNQAGRKVSGTTLGFQEQEVRQQLLEQKIIIKKIKKTSPSILAKMRDQMKGEDITAVTRQLATMI
ESGVPVVQALQLMASSYNKAEMRATLLQITTQVESGASLSSAMRSSSPLFDKFYCDLVATGEQTGHLGQVFARIAVYREK
NEAMRKKVIKAMIYPSMVMLTAVLVTVLMLVFVIPQFAQIFSSFGAELPFFTQIVMHASDFLIAYGTYMAIGIASIIFLY
RYFYKKSEDFRYKSNKFVLKLPIFGNVLLKATIARFARTLATTFMAGIPLLSGIQSAGRTCGNLYIERAIEEVYESTAGG
MPLYLALRQSGVFPELMLQMVMIGEESGALDDMLNKMAQIYEADVDNTVDNLGQILEPFIIIILGGLIGGLLVAMYMPIF
TLMSVIG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1104926 ACN08S_RS18995 WP_419208947.1 1562642..1563865(+) (pilC) [Photobacterium leiognathi subsp. mandapamensis strain Sr2.36]
ATGAGTACAGCTACCACTAAAATTCGCTATTACAACTGGCGTGGAACTAACCAAGCAGGGCGTAAAGTTTCAGGCACCAC
ATTAGGCTTTCAAGAACAGGAAGTTCGCCAACAACTGCTTGAACAAAAGATCATTATTAAGAAAATCAAGAAAACCTCGC
CTTCGATTTTGGCAAAAATGCGCGACCAAATGAAAGGGGAAGATATAACTGCAGTCACCCGCCAGCTTGCCACCATGATT
GAATCCGGTGTCCCTGTTGTTCAAGCACTACAGTTAATGGCGAGCAGTTATAACAAAGCTGAAATGCGCGCCACCTTATT
GCAAATTACAACCCAAGTAGAATCGGGCGCTTCCCTTTCCAGCGCCATGCGCTCTAGCTCGCCTTTGTTTGATAAATTCT
ACTGTGATTTGGTGGCAACTGGTGAGCAAACCGGCCACCTCGGACAAGTCTTTGCCCGTATTGCGGTTTACCGTGAAAAA
AACGAAGCAATGCGTAAAAAAGTCATCAAAGCCATGATTTACCCATCAATGGTTATGCTAACAGCTGTGCTGGTCACCGT
TCTAATGCTGGTTTTTGTTATCCCCCAATTTGCCCAGATATTTTCAAGCTTTGGTGCTGAATTGCCATTCTTTACCCAAA
TCGTTATGCATGCATCGGATTTTCTTATTGCCTATGGCACCTATATGGCAATAGGTATTGCATCAATTATTTTTCTCTAC
CGTTATTTTTATAAAAAATCTGAAGATTTCCGCTATAAATCCAATAAGTTTGTATTAAAACTGCCTATATTTGGTAATGT
ATTACTCAAAGCCACCATTGCCCGTTTTGCTCGCACTCTAGCCACCACTTTTATGGCGGGTATTCCTCTTCTTTCAGGTA
TCCAATCAGCAGGGAGAACCTGTGGTAATTTATACATTGAAAGAGCTATTGAAGAAGTTTATGAAAGTACCGCTGGCGGT
ATGCCTTTGTATTTAGCCCTGCGTCAATCGGGCGTTTTTCCAGAGCTGATGCTGCAAATGGTAATGATCGGGGAAGAATC
TGGTGCACTTGATGACATGCTCAATAAAATGGCGCAAATCTATGAAGCGGATGTAGATAATACCGTTGATAACCTTGGGC
AAATTTTAGAGCCTTTCATCATCATTATTCTAGGTGGCTTGATCGGTGGCTTACTGGTGGCGATGTATATGCCAATCTTT
ACCTTAATGAGCGTTATCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

55.911

99.754

0.558
  pilC Vibrio campbellii strain DS40M4

52.58

100

0.526
  pilC Acinetobacter baumannii D1279779

41.562

97.543

0.405
  pilG Neisseria meningitidis 44/76-A

40.648

98.526

0.4
  pilG Neisseria gonorrhoeae MS11

40.648

98.526

0.4
  pilC Pseudomonas stutzeri DSM 10701

39.655

99.754

0.396
  pilC Acinetobacter baylyi ADP1

40.05

97.543

0.391
  pilC Legionella pneumophila strain ERS1305867

37.745

100

0.378

Multiple sequence alignment