Detailed information NTG1104927

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACN08S_RS19000
• Genome accession: NZ_CP183265
• Coordinates: 1563954..1564823 (+)
• Length: 289 a.a.
• NCBI ID: WP_419208948.1
• Uniprot ID: -
• Organism: Photobacterium leiognathi subsp. mandapamensis strain Sr2.36
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1558954..1569823

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN08S_RS18975 (ACN08S_19010)	-	1558983..1559060 (+)	78	Protein_1438	type IV pilin protein	-
ACN08S_RS18980 (ACN08S_19015)	-	1559171..1560487 (+)	1317	WP_419208245.1	ISNCY family transposase	-
ACN08S_RS18985 (ACN08S_19020)	-	1560510..1560908 (+)	399	WP_419208945.1	pilin	-
ACN08S_RS18990 (ACN08S_19025)	pilB	1560912..1562597 (+)	1686	WP_419208946.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACN08S_RS18995 (ACN08S_19030)	pilC	1562642..1563865 (+)	1224	WP_419208947.1	type II secretion system F family protein	Machinery gene
ACN08S_RS19000 (ACN08S_19035)	pilD	1563954..1564823 (+)	870	WP_419208948.1	prepilin peptidase	Machinery gene
ACN08S_RS19005 (ACN08S_19040)	coaE	1564827..1565432 (+)	606	WP_419208949.1	dephospho-CoA kinase	-
ACN08S_RS19010 (ACN08S_19045)	zapD	1565497..1566243 (+)	747	WP_419208950.1	cell division protein ZapD	-
ACN08S_RS19015 (ACN08S_19050)	yacG	1566251..1566472 (+)	222	WP_318469651.1	DNA gyrase inhibitor YacG	-
ACN08S_RS19020 (ACN08S_19055)	mutT	1566477..1566881 (+)	405	WP_419208951.1	8-oxo-dGTP diphosphatase MutT	-
ACN08S_RS19025 (ACN08S_19060)	secA	1566971..1569703 (-)	2733	WP_419208953.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32233.49 Da
• Isoelectric Point: 5.2299

>NTDB_id=1104927 ACN08S_RS19000 WP_419208948.1 1563954..1564823(+) (pilD) [Photobacterium leiognathi subsp. mandapamensis strain Sr2.36]
MAVLDYYPWLYPLFAVIFGLLVGSFLNVVIYRLPIMMERQWRKECQECFPEINAEQDDSVFNLSVPRSRCPHCSHAISAL
ENIPLISWLALGGKCKECKTPISKRYPAIELLTAAMSLTVSLMLPPSWWSLAVIFFTFALIVLTFIDIDKMLLPDQITLP
LMWAGILLSVAGISPVSLTDSVIGAMAGYLSLWSVFWVFKLLTKKDGMGYGDFKLLAALGAWLGWQLLPFVVLLSSLVGA
LCGLVLLKMQDADNQTPFSFGPYLAIAGWIAMLWGAPIIDWYLTSYLGM

Nucleotide

• Length: 870 bp

>NTDB_id=1104927 ACN08S_RS19000 WP_419208948.1 1563954..1564823(+) (pilD) [Photobacterium leiognathi subsp. mandapamensis strain Sr2.36]
ATGGCAGTACTTGATTATTACCCTTGGCTTTACCCTCTTTTTGCCGTTATTTTTGGTTTGCTTGTCGGTAGCTTTTTAAA
TGTGGTGATCTATCGCCTGCCTATCATGATGGAGCGTCAATGGCGTAAAGAATGCCAAGAGTGTTTTCCTGAAATCAACG
CAGAGCAAGACGACAGTGTATTTAATTTAAGTGTGCCACGTTCACGTTGCCCGCATTGTAGTCATGCCATTAGCGCGTTG
GAAAATATTCCTTTGATCAGTTGGCTAGCACTCGGCGGCAAATGCAAAGAATGCAAAACACCGATCAGTAAACGCTACCC
TGCCATTGAGTTACTAACAGCCGCTATGAGCTTAACCGTATCATTAATGTTGCCACCATCATGGTGGTCACTGGCAGTGA
TCTTTTTTACCTTCGCATTAATTGTACTAACTTTTATCGATATCGATAAAATGCTACTACCCGATCAAATCACCTTGCCA
TTAATGTGGGCGGGTATCTTATTGTCGGTAGCTGGTATTAGCCCTGTATCCCTAACCGATTCAGTGATCGGTGCGATGGC
AGGTTATTTATCACTGTGGAGTGTATTCTGGGTATTTAAACTGCTGACTAAAAAAGATGGCATGGGCTACGGTGACTTCA
AACTACTTGCCGCATTAGGTGCATGGCTTGGCTGGCAATTACTGCCTTTCGTTGTGTTATTATCATCTCTTGTTGGTGCG
CTATGTGGTCTTGTATTACTTAAGATGCAAGACGCTGATAACCAAACGCCATTCTCATTTGGTCCTTACCTTGCGATTGC
TGGATGGATTGCAATGCTTTGGGGCGCACCAATCATCGACTGGTACTTAACATCATACTTAGGAATGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-122)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	61.938	100	0.619
pilD	Vibrio cholerae strain A1552	61.111	99.654	0.609
pilD	Acinetobacter nosocomialis M2	53.558	92.388	0.495
pilD	Acinetobacter baumannii D1279779	52.809	92.388	0.488
pilD	Neisseria gonorrhoeae MS11	47.872	97.578	0.467