Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACN08M_RS04910 Genome accession   NZ_CP183250
Coordinates   999384..1000607 (+) Length   407 a.a.
NCBI ID   WP_419239399.1    Uniprot ID   -
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sc16.3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 994384..1005607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08M_RS04890 (ACN08M_04890) ampD 995230..995775 (-) 546 WP_419239397.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACN08M_RS04895 (ACN08M_04895) nadC 996026..996913 (+) 888 WP_419240159.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACN08M_RS04900 (ACN08M_04900) pilA 997261..997650 (+) 390 WP_045068531.1 pilin Machinery gene
  ACN08M_RS04905 (ACN08M_04905) pilB 997654..999339 (+) 1686 WP_419239398.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACN08M_RS04910 (ACN08M_04910) pilC 999384..1000607 (+) 1224 WP_419239399.1 type II secretion system F family protein Machinery gene
  ACN08M_RS04915 (ACN08M_04915) pilD 1000696..1001565 (+) 870 WP_419239400.1 prepilin peptidase Machinery gene
  ACN08M_RS04920 (ACN08M_04920) coaE 1001569..1002174 (+) 606 WP_318444194.1 dephospho-CoA kinase -
  ACN08M_RS04925 (ACN08M_04925) zapD 1002239..1002985 (+) 747 WP_042117295.1 cell division protein ZapD -
  ACN08M_RS04930 (ACN08M_04930) yacG 1002993..1003214 (+) 222 WP_008987916.1 DNA gyrase inhibitor YacG -
  ACN08M_RS04935 (ACN08M_04935) mutT 1003219..1003623 (+) 405 WP_318487661.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45160.21 Da        Isoelectric Point: 9.4953

>NTDB_id=1104848 ACN08M_RS04910 WP_419239399.1 999384..1000607(+) (pilC) [Photobacterium leiognathi subsp. mandapamensis strain Sc16.3]
MSTAATKIRYYNWRGTNQAGRKVSGTTLGFQEQEVRQQLLDQKIVIKKIKKTSPSILAKMRDQMKGEDVTAVTRQLATMI
ESGVPVVQALQLMASSYNKAEMRATLLQITTQVESGASLSSAMRSSSPLFDKFFCDLVATGEQTGHLGQVFARIAVYREK
NEAMRKKVIKAMIYPSMVMLTAVLVTVMMLVFVIPQFAQIFSSFGAELPFFTQIVMHASDFLIAYGTYMAIGIASIVFLY
RYFYKKSDDFRYKSNKFVLRLPIFGDVLLKATIARFARTLATTFMAGIPLLSGIQSAGRTCGNLYIERAIEEVYESTAGG
MPLYLALRQSGVFPELMLQMVMIGEESGALDDMLNKMAQIYEADVDNTVDNLGQILEPFIIIILGGLIGGLLVAMYMPIF
TLMSVIG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1104848 ACN08M_RS04910 WP_419239399.1 999384..1000607(+) (pilC) [Photobacterium leiognathi subsp. mandapamensis strain Sc16.3]
ATGAGTACAGCTGCTACTAAAATTCGCTATTACAACTGGCGTGGAACCAACCAAGCAGGACGTAAAGTTTCAGGCACTAC
ACTAGGCTTTCAAGAACAAGAAGTTCGCCAACAGCTGTTAGACCAAAAAATTGTTATAAAGAAAATAAAGAAAACCTCGC
CTTCGATTTTGGCAAAAATGCGCGACCAAATGAAAGGGGAAGATGTCACCGCAGTCACCCGCCAGCTTGCCACAATGATC
GAATCCGGTGTTCCCGTTGTTCAAGCACTTCAACTAATGGCAAGCAGTTATAACAAAGCTGAAATGCGCGCAACCTTATT
GCAAATCACCACCCAAGTGGAATCGGGCGCATCCCTTTCCAGTGCAATGCGCTCTAGCTCGCCACTATTTGATAAATTCT
TCTGTGATTTGGTGGCAACTGGTGAGCAAACTGGTCACCTCGGGCAAGTCTTTGCCCGTATTGCGGTTTACCGTGAAAAA
AACGAAGCAATGCGTAAAAAAGTCATCAAAGCCATGATTTATCCATCCATGGTTATGCTAACAGCAGTTCTGGTTACCGT
AATGATGCTGGTCTTTGTTATCCCGCAATTTGCCCAGATTTTTTCAAGCTTTGGTGCTGAATTGCCTTTCTTTACCCAAA
TCGTCATGCATGCATCAGATTTTCTTATTGCCTATGGCACCTATATGGCAATAGGTATTGCATCGATTGTTTTTCTCTAC
CGTTATTTTTATAAGAAATCGGACGATTTCCGCTATAAATCAAATAAGTTCGTGTTAAGGCTTCCGATCTTTGGTGATGT
ATTACTAAAAGCCACCATTGCCCGTTTTGCCCGCACCCTAGCCACCACTTTTATGGCTGGTATTCCACTGCTATCAGGTA
TCCAATCAGCAGGAAGAACCTGTGGTAATTTATACATAGAAAGAGCCATTGAAGAAGTTTATGAAAGTACCGCTGGCGGT
ATGCCTCTATATTTAGCCCTGCGTCAATCGGGCGTTTTTCCAGAGCTAATGCTGCAAATGGTGATGATAGGTGAAGAGTC
TGGTGCACTTGATGACATGCTCAATAAAATGGCGCAAATCTATGAAGCGGATGTCGATAATACCGTTGATAACCTTGGCC
AAATTTTAGAACCTTTCATCATCATAATTCTAGGTGGCTTGATCGGTGGCTTACTGGTAGCGATGTATATGCCAATCTTC
ACCTTAATGAGCGTTATCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

54.433

99.754

0.543
  pilC Vibrio campbellii strain DS40M4

52.58

100

0.526
  pilC Acinetobacter baumannii D1279779

41.31

97.543

0.403
  pilG Neisseria gonorrhoeae MS11

40.447

99.017

0.4
  pilG Neisseria meningitidis 44/76-A

40.447

99.017

0.4
  pilC Acinetobacter baylyi ADP1

40.302

97.543

0.393
  pilC Pseudomonas stutzeri DSM 10701

39.163

99.754

0.391
  pilC Legionella pneumophila strain ERS1305867

38.636

97.297

0.376

Multiple sequence alignment