Detailed information NTG1104849

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACN08M_RS04915
• Genome accession: NZ_CP183250
• Coordinates: 1000696..1001565 (+)
• Length: 289 a.a.
• NCBI ID: WP_419239400.1
• Uniprot ID: -
• Organism: Photobacterium leiognathi subsp. mandapamensis strain Sc16.3
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 995696..1006565

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN08M_RS04895 (ACN08M_04895)	nadC	996026..996913 (+)	888	WP_419240159.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACN08M_RS04900 (ACN08M_04900)	pilA	997261..997650 (+)	390	WP_045068531.1	pilin	Machinery gene
ACN08M_RS04905 (ACN08M_04905)	pilB	997654..999339 (+)	1686	WP_419239398.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACN08M_RS04910 (ACN08M_04910)	pilC	999384..1000607 (+)	1224	WP_419239399.1	type II secretion system F family protein	Machinery gene
ACN08M_RS04915 (ACN08M_04915)	pilD	1000696..1001565 (+)	870	WP_419239400.1	prepilin peptidase	Machinery gene
ACN08M_RS04920 (ACN08M_04920)	coaE	1001569..1002174 (+)	606	WP_318444194.1	dephospho-CoA kinase	-
ACN08M_RS04925 (ACN08M_04925)	zapD	1002239..1002985 (+)	747	WP_042117295.1	cell division protein ZapD	-
ACN08M_RS04930 (ACN08M_04930)	yacG	1002993..1003214 (+)	222	WP_008987916.1	DNA gyrase inhibitor YacG	-
ACN08M_RS04935 (ACN08M_04935)	mutT	1003219..1003623 (+)	405	WP_318487661.1	8-oxo-dGTP diphosphatase MutT	-
ACN08M_RS04940 (ACN08M_04940)	secA	1003713..1006445 (-)	2733	WP_045063166.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32219.42 Da
• Isoelectric Point: 4.9583

>NTDB_id=1104849 ACN08M_RS04915 WP_419239400.1 1000696..1001565(+) (pilD) [Photobacterium leiognathi subsp. mandapamensis strain Sc16.3]
MAVLDYYPWLYPLFAVIFGLLVGSFLNVVIYRLPIMMERQWRKECQECFPEVDAEQDDSVFNLSVPRSRCPHCNHAISAL
ENIPVLSWLVLGGKCKECKAPISKRYPTIELLTAAMSLTVSLMLPPSWWSLAVIFFTFALIALTFIDIDKMLLPDQITLP
LMWAGILLSVAGISPVSLTDSVIGAMAGYLSLWSVFWVFKLLTKKDGMGYGDFKLLAALGAWLGWQLLPFVVLLSSLVGA
LCGLVLLKMQDADNQTPFSFGPYLAIAGWVAMLWGAPIIDWYLTSYLGM

Nucleotide

• Length: 870 bp

>NTDB_id=1104849 ACN08M_RS04915 WP_419239400.1 1000696..1001565(+) (pilD) [Photobacterium leiognathi subsp. mandapamensis strain Sc16.3]
ATGGCAGTACTTGATTATTACCCTTGGCTTTACCCTCTTTTTGCCGTTATTTTTGGTTTGCTTGTCGGTAGTTTTTTAAA
CGTAGTGATCTACCGTCTGCCTATCATGATGGAGCGTCAATGGCGTAAGGAATGCCAAGAGTGTTTTCCTGAAGTCGACG
CAGAGCAAGACGACAGCGTATTTAATTTAAGTGTGCCACGTTCACGTTGCCCGCACTGTAATCATGCCATTAGCGCGTTG
GAAAATATTCCAGTGCTCAGTTGGCTAGTACTTGGCGGCAAATGCAAAGAATGCAAAGCACCGATCAGTAAACGCTACCC
TACCATTGAGTTACTGACTGCTGCTATGAGCTTAACCGTATCATTAATGTTGCCACCATCATGGTGGTCACTGGCAGTGA
TCTTTTTTACCTTCGCGTTAATTGCACTAACTTTTATCGATATCGATAAAATGCTACTGCCCGATCAAATCACCTTGCCA
TTAATGTGGGCGGGTATCTTATTGTCTGTAGCTGGTATTAGCCCAGTATCGCTAACCGATTCAGTGATCGGTGCGATGGC
TGGTTATTTATCGCTTTGGAGTGTGTTCTGGGTATTTAAACTGCTGACTAAAAAAGATGGCATGGGCTACGGTGATTTCA
AACTGCTTGCTGCATTAGGAGCATGGCTTGGTTGGCAATTACTGCCTTTCGTTGTGTTACTATCATCTCTTGTTGGTGCG
CTATGTGGTCTTGTATTACTTAAGATGCAAGACGCTGATAACCAAACGCCATTCTCATTTGGTCCTTACCTTGCGATTGC
TGGATGGGTCGCAATGCTTTGGGGCGCACCAATCATCGACTGGTATTTAACATCATACTTAGGAATGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-122)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	62.976	100	0.63
pilD	Vibrio cholerae strain A1552	61.458	99.654	0.612
pilD	Acinetobacter nosocomialis M2	53.03	91.349	0.484
pilD	Acinetobacter baumannii D1279779	53.03	91.349	0.484
pilD	Neisseria gonorrhoeae MS11	47.163	97.578	0.46